Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945. 1_202015-01-15] 322 sequences; 39,089,698 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq61 226 3e-54 seq1 84.2 3e-11 >seq61 Length=193651 Score = 226 bits (250), Expect = 3e-54 Identities = 685/1044 (66%), Gaps = 27/1044 (3%) Strand=Plus/Plus Query 75211 CCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGT 75270 ||| ||| | ||| ||||||| ||| | | || |||||| |||||||||||| || Sbjct 57721 CCCCCAGCAGATGCTCATGCGTGTCTCTGTGGGTATCCACAAGGAAGACATTGACCGTGC 57780 Query 75271 CTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATT---CACGCAACACCAACCCT 75327 | | ||||| ||| ||| |||||| ||| | |||| || ||||| || || || || Sbjct 57781 CATTGAGACCTACAACATGATGTCGCAA---AAGTTCTTTACGCACGCCACGCCCACGCT 57837 Query 75328 CTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGA 75387 |||||| || ||||| || | ||||||||||| || |||||||| | || ||||| Sbjct 57838 CTTCAACGCCGGTACCCCGCGCCCGCAGATGTCGAGCTGCTTCCTCGTGCACATGAAGGA 57897 Query 75388 GGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGC 75447 ||||| || | || |||| || || | ||| |||| ||||| |||| || Sbjct 57898 CGACTCGATTGAGGGCATCTTCCAGACGCTCGAGACGTGCGCGCGCATCTCCAAGTACGC 57957 Query 75448 TGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATA-AATCT-CGTATTCGGGGG 75505 || || ||||| | ||||||| | | | || || || ||| ||| Sbjct 57958 CGGCGGCATTGGTGTCAACATCCACAACATTCGCGCTTCGGGAAGCTACGTGGCCGGC-- 58015 Query 75506 ACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGC 75565 || || || | || | || || | || ||||| ||||| || |||| ||| || ||| Sbjct 58016 ACCAACGGCAAGTCCAACGGCATCGTGCCCATGCTGCGCGTCTTCAACGACACGGCCCGC 58075 Query 75566 TATGTAAATCAAG-CGG-GGCGT-CGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGG 75622 || || | || | ||| ||| |||||||| ||| | || | ||| | || || ||| Sbjct 58076 TACGTGGACCAGGGCGGCGGCAAGCGCAAGGGCTCCTTTGCCATGTACCTTGAGCCCTGG 58135 Query 75623 CATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGG 75682 |||||||| || || || ||||| | || ||||| ||| | || ||| || Sbjct 58136 CATGCCGACGTCGAAGACTTTATTGAGCTCCGCAAGAACCACGGTAAGGAGGAGAACCGC 58195 Query 75683 TGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAG 75742 | || ||||||| | || ||| | || |||||||||||| |||| || |||| | Sbjct 58196 GCGCGCGACCTCTTTTACGCGCTCTGGGTCCCTGACCTTTTCATGGAGCGCGTCGAGGCG 58255 Query 75743 GGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTGGGT 75802 | ||| | || || || || || |||| || ||||| |||| || Sbjct 58256 AACAGCACCTGGACGCTCTTTTGCCCGAACGAGGCCAAGGGGCTCTCGGACGTCTATGGC 58315 Query 75803 GAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGC---CAATGCGACT 75859 || ||||| | | |||||| || || |||||||| | | ||| ||| Sbjct 58316 GACGAGTTCAAGGAGCTCTACGAGCGCTACGAGAAGGAGGGTCGCGGTCGCAAGACGA-- 58373 Query 75860 GTACCAGCCGCCGATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCA 75919 | | ||| || | ||| | ||||||| | |||| ||||| || || Sbjct 58374 -TGCGCGCCCAGGACCTCTGGTACCAGATTCTCAGCTGCCAGATCGAGACGGGTGTGCCC 58432 Query 75920 TATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATC 75979 | |||||||| |||||| || || ||| ||| ||||| ||||| | || | ||| Sbjct 58433 TTTATGCTTTTCAAGGACGCATGCAACCGCAAGTCGAACCAGAAGAACCTTGGCATCATC 58492 Query 75980 AAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTT 76039 ||| ||| || || |||||||| || | |||||||| | ||||||| |||||| Sbjct 58493 AAGTCCTCGAACCTCTGCACGGAGATCATCGAGTACACTGCCCCGGATGAGGTCGCTGTT 58552 Query 76040 TGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAA---TGAAGAGACTCGCACTTTT 76096 ||||| |||| || ||| ||||| |||| |||||| |||||| |||| | | Sbjct 58553 TGCAACCTGGCCTCGATCAACCTTCGCAAGTTTGTCAACATCGAAGAG---GGCACCTAT 58609 Query 76097 GATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATT 76156 || | | | || |||| |||| || |||| ||||| || |||||||| || ||| Sbjct 58610 GACTTTCAGGGCCTCTATGATGTCACCAAAGTTGTGACCAAGAACCTAAACCGCGTTATT 58669 Query 76157 GACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAG-TCTAATATGCGACACAGACCTAT 76215 ||| | || ||||| ||||| ||| || ||| | || ||||| ||| | ||| | Sbjct 58670 GACGGCAACTTTTACCCCGTCGAGGAGGC-CGAGCGCAGCAACATGCGCCACCGCCCTGT 58728 Query 76216 TGGTTTGGGTGTTCAAGGTCTCGC 76239 || | ||||| || || ||||| Sbjct 58729 CGGCATTGGTGTACAGGGCCTCGC 58752 >seq1 Length=1674554 Score = 84.2 bits (92), Expect = 3e-11 Identities = 105/142 (74%), Gaps = 4/142 (3%) Strand=Plus/Plus Query 12691 TCCCGAACTTACATTTGGGCATCTTCTTACGAGTACAAATTATGATGACACAAAGAAGAG 12750 ||||||||| ||||| || || || ||| || ||||| ||| ||||| | ||| | Sbjct 1190762 TCCCGAACTCGTCTTTGGCCACCTCCTGACGGGTGAAAATTTTGAGGACACCCAAAAGCG 1190821 Query 12751 AATTGTGGGAGGTCGCAACGGCTATGGTGCCAAGTTGACCAACATCTACTCATC--GGAG 12808 |||| || || ||||||||||| ||||||||| | ||||||||| ||| | |||| Sbjct 1190822 TGTTGTCGGTGGACGCAACGGCTACGGTGCCAAGCTTGCCAACATCT--TCAGCAAGGAG 1190879 Query 12809 TTTTCCATTGTGATCAAGGATG 12830 || ||| | | || ||| |||| Sbjct 1190880 TTCTCCGTGGAGACCAATGATG 1190901 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596567198807360