Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945.
1_202015-01-15] 322 sequences; 39,089,698 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq61 226 3e-54
seq1 84.2 3e-11
>seq61
Length=193651
Score = 226 bits (250), Expect = 3e-54
Identities = 685/1044 (66%), Gaps = 27/1044 (3%)
Strand=Plus/Plus
Query 75211 CCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGT 75270
||| ||| | ||| ||||||| ||| | | || |||||| |||||||||||| ||
Sbjct 57721 CCCCCAGCAGATGCTCATGCGTGTCTCTGTGGGTATCCACAAGGAAGACATTGACCGTGC 57780
Query 75271 CTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATT---CACGCAACACCAACCCT 75327
| | ||||| ||| ||| |||||| ||| | |||| || ||||| || || || ||
Sbjct 57781 CATTGAGACCTACAACATGATGTCGCAA---AAGTTCTTTACGCACGCCACGCCCACGCT 57837
Query 75328 CTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGA 75387
|||||| || ||||| || | ||||||||||| || |||||||| | || |||||
Sbjct 57838 CTTCAACGCCGGTACCCCGCGCCCGCAGATGTCGAGCTGCTTCCTCGTGCACATGAAGGA 57897
Query 75388 GGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGC 75447
||||| || | || |||| || || | ||| |||| ||||| |||| ||
Sbjct 57898 CGACTCGATTGAGGGCATCTTCCAGACGCTCGAGACGTGCGCGCGCATCTCCAAGTACGC 57957
Query 75448 TGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATA-AATCT-CGTATTCGGGGG 75505
|| || ||||| | ||||||| | | | || || || ||| |||
Sbjct 57958 CGGCGGCATTGGTGTCAACATCCACAACATTCGCGCTTCGGGAAGCTACGTGGCCGGC-- 58015
Query 75506 ACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGC 75565
|| || || | || | || || | || ||||| ||||| || |||| ||| || |||
Sbjct 58016 ACCAACGGCAAGTCCAACGGCATCGTGCCCATGCTGCGCGTCTTCAACGACACGGCCCGC 58075
Query 75566 TATGTAAATCAAG-CGG-GGCGT-CGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGG 75622
|| || | || | ||| ||| |||||||| ||| | || | ||| | || || |||
Sbjct 58076 TACGTGGACCAGGGCGGCGGCAAGCGCAAGGGCTCCTTTGCCATGTACCTTGAGCCCTGG 58135
Query 75623 CATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGG 75682
|||||||| || || || ||||| | || ||||| ||| | || ||| ||
Sbjct 58136 CATGCCGACGTCGAAGACTTTATTGAGCTCCGCAAGAACCACGGTAAGGAGGAGAACCGC 58195
Query 75683 TGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAG 75742
| || ||||||| | || ||| | || |||||||||||| |||| || |||| |
Sbjct 58196 GCGCGCGACCTCTTTTACGCGCTCTGGGTCCCTGACCTTTTCATGGAGCGCGTCGAGGCG 58255
Query 75743 GGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTGGGT 75802
| ||| | || || || || || |||| || ||||| |||| ||
Sbjct 58256 AACAGCACCTGGACGCTCTTTTGCCCGAACGAGGCCAAGGGGCTCTCGGACGTCTATGGC 58315
Query 75803 GAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGC---CAATGCGACT 75859
|| ||||| | | |||||| || || |||||||| | | ||| |||
Sbjct 58316 GACGAGTTCAAGGAGCTCTACGAGCGCTACGAGAAGGAGGGTCGCGGTCGCAAGACGA-- 58373
Query 75860 GTACCAGCCGCCGATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCA 75919
| | ||| || | ||| | ||||||| | |||| ||||| || ||
Sbjct 58374 -TGCGCGCCCAGGACCTCTGGTACCAGATTCTCAGCTGCCAGATCGAGACGGGTGTGCCC 58432
Query 75920 TATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATC 75979
| |||||||| |||||| || || ||| ||| ||||| ||||| | || | |||
Sbjct 58433 TTTATGCTTTTCAAGGACGCATGCAACCGCAAGTCGAACCAGAAGAACCTTGGCATCATC 58492
Query 75980 AAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTT 76039
||| ||| || || |||||||| || | |||||||| | ||||||| ||||||
Sbjct 58493 AAGTCCTCGAACCTCTGCACGGAGATCATCGAGTACACTGCCCCGGATGAGGTCGCTGTT 58552
Query 76040 TGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAA---TGAAGAGACTCGCACTTTT 76096
||||| |||| || ||| ||||| |||| |||||| |||||| |||| | |
Sbjct 58553 TGCAACCTGGCCTCGATCAACCTTCGCAAGTTTGTCAACATCGAAGAG---GGCACCTAT 58609
Query 76097 GATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATT 76156
|| | | | || |||| |||| || |||| ||||| || |||||||| || |||
Sbjct 58610 GACTTTCAGGGCCTCTATGATGTCACCAAAGTTGTGACCAAGAACCTAAACCGCGTTATT 58669
Query 76157 GACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAG-TCTAATATGCGACACAGACCTAT 76215
||| | || ||||| ||||| ||| || ||| | || ||||| ||| | ||| |
Sbjct 58670 GACGGCAACTTTTACCCCGTCGAGGAGGC-CGAGCGCAGCAACATGCGCCACCGCCCTGT 58728
Query 76216 TGGTTTGGGTGTTCAAGGTCTCGC 76239
|| | ||||| || || |||||
Sbjct 58729 CGGCATTGGTGTACAGGGCCTCGC 58752
>seq1
Length=1674554
Score = 84.2 bits (92), Expect = 3e-11
Identities = 105/142 (74%), Gaps = 4/142 (3%)
Strand=Plus/Plus
Query 12691 TCCCGAACTTACATTTGGGCATCTTCTTACGAGTACAAATTATGATGACACAAAGAAGAG 12750
||||||||| ||||| || || || ||| || ||||| ||| ||||| | ||| |
Sbjct 1190762 TCCCGAACTCGTCTTTGGCCACCTCCTGACGGGTGAAAATTTTGAGGACACCCAAAAGCG 1190821
Query 12751 AATTGTGGGAGGTCGCAACGGCTATGGTGCCAAGTTGACCAACATCTACTCATC--GGAG 12808
|||| || || ||||||||||| ||||||||| | ||||||||| ||| | ||||
Sbjct 1190822 TGTTGTCGGTGGACGCAACGGCTACGGTGCCAAGCTTGCCAACATCT--TCAGCAAGGAG 1190879
Query 12809 TTTTCCATTGTGATCAAGGATG 12830
|| ||| | | || ||| ||||
Sbjct 1190880 TTCTCCGTGGAGACCAATGATG 1190901
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596567198807360
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