Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945.
1_202015-01-15] 322 sequences; 39,089,698 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq29 96.9 1e-14
seq19 93.3 1e-13
>seq29
Length=456269
Score = 96.9 bits (106), Expect = 1e-14
Identities = 204/299 (68%), Gaps = 8/299 (3%)
Strand=Plus/Plus
Query 302572 TCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAG-C 302630
|| |||| | ||||| | ||||| ||||| || || ||| | | | | |||||| |
Sbjct 224793 TCCTCCAGAGCCTTGACGAGGCGACGTTGAATGTACCCGGTT-TCGGCGGTCTTACAGGC 224851
Query 302631 TGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAG 302690
|||||||| ||||| | ||||| ||||| ||||| ||| | | || | ||| ||
Sbjct 224852 CGTATCAATGAGACCCTCGCGACCGCCCATGGCATGAAAGTAGAATTCCTGCGGCGACAG 224911
Query 302691 CCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG--CGA-ATCGTCGAACTT 302747
|| | | || |||| || ||||| |||| |||||| ||| |||||| |||
Sbjct 224912 GCCTTTGAGGTACGAATTCTCCACAAAACCGCGCGACTCGGGGCCGAGATCGTC---CTT 224968
Query 302748 GGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTT 302807
| |||||| || || || | || | | |||| | || || |||| || || |||||
Sbjct 224969 GTAAAAGTGCGGGAGCGTGCGGTACCTAAAGCCAAAGGGAATGCGCTGGCCTTCCACGTT 225028
Query 302808 CTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGCCAG 302866
||||| || | ||| || ||||| || || || | |||||||||||||||||
Sbjct 225029 TTGCTGCCCGACGCAGCCCATGATCTGGGAGATGTTGATGAAACTGCCCTTGGAGCCAG 225087
>seq19
Length=651960
Score = 93.3 bits (102), Expect = 1e-13
Identities = 126/176 (72%), Gaps = 0/176 (0%)
Strand=Plus/Minus
Query 251485 GCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGA 251544
||||| || ||||| | |||||||||||||| |||||||||||||||||||| |||||
Sbjct 462214 GCACCATGGGAAATGAGGCAATCACGCTCCATCTCACCGAAACGAAGACCACCCTCGCGC 462155
Query 251545 GCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATGT 251604
|| | || || |||||||| || || | || || ||| | ||| || ||
Sbjct 462154 GCACGGCCTTCCATGGGCTGACGCGTAAGCATCGTCACGGGCCCGCGCGCGCGACTGTGG 462095
Query 251605 TGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGAT 251660
||| | ||||| |||||||||||||| ||| | | ||| || | ||| ||
Sbjct 462094 ATCTTGTGGGCAACCATGTGCTTGAGACGCTGATAGTACGTGGGGCCCAAGAAAAT 462039
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471811527832514
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |