Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945. 1_202015-01-15] 322 sequences; 39,089,698 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq29 96.9 1e-14 seq19 93.3 1e-13 >seq29 Length=456269 Score = 96.9 bits (106), Expect = 1e-14 Identities = 204/299 (68%), Gaps = 8/299 (3%) Strand=Plus/Plus Query 302572 TCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAG-C 302630 || |||| | ||||| | ||||| ||||| || || ||| | | | | |||||| | Sbjct 224793 TCCTCCAGAGCCTTGACGAGGCGACGTTGAATGTACCCGGTT-TCGGCGGTCTTACAGGC 224851 Query 302631 TGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAG 302690 |||||||| ||||| | ||||| ||||| ||||| ||| | | || | ||| || Sbjct 224852 CGTATCAATGAGACCCTCGCGACCGCCCATGGCATGAAAGTAGAATTCCTGCGGCGACAG 224911 Query 302691 CCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG--CGA-ATCGTCGAACTT 302747 || | | || |||| || ||||| |||| |||||| ||| |||||| ||| Sbjct 224912 GCCTTTGAGGTACGAATTCTCCACAAAACCGCGCGACTCGGGGCCGAGATCGTC---CTT 224968 Query 302748 GGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTT 302807 | |||||| || || || | || | | |||| | || || |||| || || ||||| Sbjct 224969 GTAAAAGTGCGGGAGCGTGCGGTACCTAAAGCCAAAGGGAATGCGCTGGCCTTCCACGTT 225028 Query 302808 CTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGCCAG 302866 ||||| || | ||| || ||||| || || || | ||||||||||||||||| Sbjct 225029 TTGCTGCCCGACGCAGCCCATGATCTGGGAGATGTTGATGAAACTGCCCTTGGAGCCAG 225087 >seq19 Length=651960 Score = 93.3 bits (102), Expect = 1e-13 Identities = 126/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 251485 GCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGA 251544 ||||| || ||||| | |||||||||||||| |||||||||||||||||||| ||||| Sbjct 462214 GCACCATGGGAAATGAGGCAATCACGCTCCATCTCACCGAAACGAAGACCACCCTCGCGC 462155 Query 251545 GCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATGT 251604 || | || || |||||||| || || | || || ||| | ||| || || Sbjct 462154 GCACGGCCTTCCATGGGCTGACGCGTAAGCATCGTCACGGGCCCGCGCGCGCGACTGTGG 462095 Query 251605 TGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGAT 251660 ||| | ||||| |||||||||||||| ||| | | ||| || | ||| || Sbjct 462094 ATCTTGTGGGCAACCATGTGCTTGAGACGCTGATAGTACGTGGGGCCCAAGAAAAT 462039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471811527832514