Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945. 1_202015-01-15] 322 sequences; 39,089,698 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq53 143 2e-29 seq7 125 5e-24 seq49 116 2e-21 seq1 93.3 3e-14 >seq53 Length=241909 Score = 143 bits (158), Expect = 2e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||||||| | |||| ||||||||| ||||| ||||| || |||| | || Sbjct 193428 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCC 193369 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| ||||||||||| || || ||||| || | || | ||||||||||| Sbjct 193368 TCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCAGGGGGAATACCCTCCTTGTCC 193309 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || || ||| | || | || || ||||||||| | ||| |||||| Sbjct 193308 TGAATCTTCTGCTTCACGTTCTCGATGGTGTCCGAGGGCTCGACATCGAGGGTGATGGTC 193249 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTG 34974 || |||||||||||||||||||||||||| Sbjct 193248 TTACCCGTGAGGGTCTTTACAAAGATCTG 193220 >seq7 Length=852142 Score = 125 bits (138), Expect = 5e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || ||||| | |||| ||||||||| ||||| ||||| || |||| | || Sbjct 77700 AGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCC 77641 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || |||||||| || || ||||| || | || | |||||||| || Sbjct 77640 TCGAGCTGCTTGCCTGCGAAGATGAGACGCTGCTGATCAGGGGGAATACCCTCCTTATCC 77581 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || |||||| | || | || | ||||||||||| ||| |||||| Sbjct 77580 TGGATCTTCTGCTTGACGTTCTCAATGGTGTCCGAAGGCTCGACATCAAGGGTGATGGTC 77521 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || |||||||||||||| || ||||||||||| Sbjct 77520 TTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 77489 Score = 116 bits (128), Expect = 2e-21 Identities = 143/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGC-TGCGCTCATCGTCCAGTTGCTTTCCGGCGA 34844 ||||||||| ||||| ||||| | || || |||| | || || || ||||| || |||| Sbjct 76996 CTCCTTCTGGATGTTGTAGTC-GCTAAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGA 76938 Query 34845 AGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGG 34904 |||| || || ||||| || | || | |||||||| || | || || || |||||| Sbjct 76937 AGATGAGACGCTGCTGATCAGGGGGAATGCCCTCCTTATCCTGGATCTTCTGCTTGACGT 76878 Query 34905 ATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTA 34964 | || | || | ||||||||||| ||| ||||| || |||||||||||||| | Sbjct 76877 TCTCAATAGTGTCCGAAGGCTCGACATCAAGGGTGATGGTTTTGCCCGTGAGGGTCTTAA 76818 Query 34965 CAAAGATCTGCAT 34977 | ||||||||||| Sbjct 76817 CGAAGATCTGCAT 76805 Score = 116 bits (128), Expect = 2e-21 Identities = 143/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGC-TGCGCTCATCGTCCAGTTGCTTTCCGGCGA 34844 ||||||||| ||||| ||||| | || || |||| | || || || ||||| || |||| Sbjct 77224 CTCCTTCTGGATGTTGTAGTC-GCTAAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGA 77166 Query 34845 AGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGG 34904 |||| || || ||||| || | || | |||||||| || | || || || |||||| Sbjct 77165 AGATGAGACGCTGCTGATCAGGGGGGATACCCTCCTTATCCTGAATCTTCTGCTTGACGT 77106 Query 34905 ATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTA 34964 | || | || | ||||||||||| ||| |||||||| || ||||| ||||||| Sbjct 77105 TCTCAATGGTGTCCGAAGGCTCGACATCAAGGGTGATGGTCTTGCCGGTGAGAGTCTTTA 77046 Query 34965 CAAAGATCTGCAT 34977 |||| |||||||| Sbjct 77045 CAAAAATCTGCAT 77033 Score = 113 bits (124), Expect = 3e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||| | || ||||||||| ||||| ||||| || |||| |||| Sbjct 77928 AGCACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTAAGTGTGCGGCCATCC 77869 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || ||||| || || || ||||| || | || | ||||||||||| Sbjct 77868 TCGAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGATCAGGGGGAATACCCTCCTTGTCC 77809 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || |||||| | |||| || || ||||||||| | || || ||| Sbjct 77808 TGGATCTTCTGCTTGACGTTCTCAATCGTGTCCGAGGGCTCGACATCGAGAGTAATAGTC 77749 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || || ||||| |||||||||||||| Sbjct 77748 TTGCCAGTCAGAGTCTTGACAAAGATCTGCAT 77717 Score = 107 bits (118), Expect = 1e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGC-TGCGCTCATCGTCCAGTTGCTTTCCGGCGA 34844 ||||||||| ||||| ||||| | || || |||| | || || || ||||| || |||| Sbjct 77452 CTCCTTCTGGATGTTGTAGTC-GCTAAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGA 77394 Query 34845 AGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGG 34904 |||| || || ||||| || | || | ||||||||||| | || || || |||||| Sbjct 77393 AGATGAGACGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTGAATCTTCTGCTTGACGT 77334 Query 34905 ATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTA 34964 | || | || || ||||||||| | || || ||||| || || || ||||| | Sbjct 77333 TCTCAATGGTGTCCGAGGGCTCGACATCGAGAGTAATAGTCTTGCCAGTCAGAGTCTTGA 77274 Query 34965 CAAAGATCTGCAT 34977 ||||||||||||| Sbjct 77273 CAAAGATCTGCAT 77261 >seq49 Length=285000 Score = 116 bits (128), Expect = 2e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || ||||| | ||| ||||||||| ||||| ||||| || |||| | || Sbjct 148327 AGCACGAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCC 148268 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| ||||||||||| || || ||||| || | || | ||||||||||| Sbjct 148267 TCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCGGGGGGGATACCCTCCTTGTCC 148208 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || || ||| | || | || || ||||||||| | ||| |||||| Sbjct 148207 TGGATCTTCTGCTTCACGTTCTCGATGGTGTCCGAGGGCTCGACATCGAGGGTGATGGTC 148148 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTG 34974 || ||||| |||||||| || |||||||| Sbjct 148147 TTGCCCGTAAGGGTCTTGACGAAGATCTG 148119 >seq1 Length=1674554 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||||||| | |||| ||||||||| ||||| ||||| || |||| | || Sbjct 772349 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCC 772290 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||| ||||||||||| || || ||||| || | || | ||||| ||||| Sbjct 772289 TCCAGCTGCTTGCCGGCGAAGATAAGGCGCTGCTGATCAGGGGGGATACCCTCTTTGTCC 772230 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || || || || || || || || | || || ||||||||| | ||| || | Sbjct 772229 TGGATCTTCTGCTTCAC--ATTCTCGATGGTGTCCGAGGGCTCGACATCGAGGGTGATAG 772172 Query 34944 TCTTTCCCGTGAGG 34957 ||| | | ||| || Sbjct 772171 TCTGTTCGGTGGGG 772158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325691521859318