Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945.
1_202015-01-15] 322 sequences; 39,089,698 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq53 143 2e-29
seq7 125 5e-24
seq49 116 2e-21
seq1 93.3 3e-14
>seq53
Length=241909
Score = 143 bits (158), Expect = 2e-29
Identities = 157/209 (75%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||||||||| | |||| ||||||||| ||||| ||||| || |||| | ||
Sbjct 193428 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCC 193369
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| || ||||| ||||||||||| || || ||||| || | || | |||||||||||
Sbjct 193368 TCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCAGGGGGAATACCCTCCTTGTCC 193309
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945
| || || || || ||| | || | || || ||||||||| | ||| ||||||
Sbjct 193308 TGAATCTTCTGCTTCACGTTCTCGATGGTGTCCGAGGGCTCGACATCGAGGGTGATGGTC 193249
Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTG 34974
|| ||||||||||||||||||||||||||
Sbjct 193248 TTACCCGTGAGGGTCTTTACAAAGATCTG 193220
>seq7
Length=852142
Score = 125 bits (138), Expect = 5e-24
Identities = 155/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| || ||||| | |||| ||||||||| ||||| ||||| || |||| | ||
Sbjct 77700 AGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCC 77641
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| || ||||| || |||||||| || || ||||| || | || | |||||||| ||
Sbjct 77640 TCGAGCTGCTTGCCTGCGAAGATGAGACGCTGCTGATCAGGGGGAATACCCTCCTTATCC 77581
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945
| || || || |||||| | || | || | ||||||||||| ||| ||||||
Sbjct 77580 TGGATCTTCTGCTTGACGTTCTCAATGGTGTCCGAAGGCTCGACATCAAGGGTGATGGTC 77521
Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|| |||||||||||||| || |||||||||||
Sbjct 77520 TTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 77489
Score = 116 bits (128), Expect = 2e-21
Identities = 143/193 (74%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGC-TGCGCTCATCGTCCAGTTGCTTTCCGGCGA 34844
||||||||| ||||| ||||| | || || |||| | || || || ||||| || ||||
Sbjct 76996 CTCCTTCTGGATGTTGTAGTC-GCTAAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGA 76938
Query 34845 AGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGG 34904
|||| || || ||||| || | || | |||||||| || | || || || ||||||
Sbjct 76937 AGATGAGACGCTGCTGATCAGGGGGAATGCCCTCCTTATCCTGGATCTTCTGCTTGACGT 76878
Query 34905 ATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTA 34964
| || | || | ||||||||||| ||| ||||| || |||||||||||||| |
Sbjct 76877 TCTCAATAGTGTCCGAAGGCTCGACATCAAGGGTGATGGTTTTGCCCGTGAGGGTCTTAA 76818
Query 34965 CAAAGATCTGCAT 34977
| |||||||||||
Sbjct 76817 CGAAGATCTGCAT 76805
Score = 116 bits (128), Expect = 2e-21
Identities = 143/193 (74%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGC-TGCGCTCATCGTCCAGTTGCTTTCCGGCGA 34844
||||||||| ||||| ||||| | || || |||| | || || || ||||| || ||||
Sbjct 77224 CTCCTTCTGGATGTTGTAGTC-GCTAAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGA 77166
Query 34845 AGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGG 34904
|||| || || ||||| || | || | |||||||| || | || || || ||||||
Sbjct 77165 AGATGAGACGCTGCTGATCAGGGGGGATACCCTCCTTATCCTGAATCTTCTGCTTGACGT 77106
Query 34905 ATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTA 34964
| || | || | ||||||||||| ||| |||||||| || ||||| |||||||
Sbjct 77105 TCTCAATGGTGTCCGAAGGCTCGACATCAAGGGTGATGGTCTTGCCGGTGAGAGTCTTTA 77046
Query 34965 CAAAGATCTGCAT 34977
|||| ||||||||
Sbjct 77045 CAAAAATCTGCAT 77033
Score = 113 bits (124), Expect = 3e-20
Identities = 152/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| |||||||| | || ||||||||| ||||| ||||| || |||| ||||
Sbjct 77928 AGCACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTAAGTGTGCGGCCATCC 77869
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| || ||||| || ||||| || || || ||||| || | || | |||||||||||
Sbjct 77868 TCGAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGATCAGGGGGAATACCCTCCTTGTCC 77809
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945
| || || || |||||| | |||| || || ||||||||| | || || |||
Sbjct 77808 TGGATCTTCTGCTTGACGTTCTCAATCGTGTCCGAGGGCTCGACATCGAGAGTAATAGTC 77749
Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|| || || || ||||| ||||||||||||||
Sbjct 77748 TTGCCAGTCAGAGTCTTGACAAAGATCTGCAT 77717
Score = 107 bits (118), Expect = 1e-18
Identities = 141/193 (73%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGC-TGCGCTCATCGTCCAGTTGCTTTCCGGCGA 34844
||||||||| ||||| ||||| | || || |||| | || || || ||||| || ||||
Sbjct 77452 CTCCTTCTGGATGTTGTAGTC-GCTAAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGA 77394
Query 34845 AGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGG 34904
|||| || || ||||| || | || | ||||||||||| | || || || ||||||
Sbjct 77393 AGATGAGACGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTGAATCTTCTGCTTGACGT 77334
Query 34905 ATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTA 34964
| || | || || ||||||||| | || || ||||| || || || ||||| |
Sbjct 77333 TCTCAATGGTGTCCGAGGGCTCGACATCGAGAGTAATAGTCTTGCCAGTCAGAGTCTTGA 77274
Query 34965 CAAAGATCTGCAT 34977
|||||||||||||
Sbjct 77273 CAAAGATCTGCAT 77261
>seq49
Length=285000
Score = 116 bits (128), Expect = 2e-21
Identities = 151/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| || ||||| | ||| ||||||||| ||||| ||||| || |||| | ||
Sbjct 148327 AGCACGAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCC 148268
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| || ||||| ||||||||||| || || ||||| || | || | |||||||||||
Sbjct 148267 TCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCGGGGGGGATACCCTCCTTGTCC 148208
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945
| || || || || ||| | || | || || ||||||||| | ||| ||||||
Sbjct 148207 TGGATCTTCTGCTTCACGTTCTCGATGGTGTCCGAGGGCTCGACATCGAGGGTGATGGTC 148148
Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTG 34974
|| ||||| |||||||| || ||||||||
Sbjct 148147 TTGCCCGTAAGGGTCTTGACGAAGATCTG 148119
>seq1
Length=1674554
Score = 93.3 bits (102), Expect = 3e-14
Identities = 138/194 (71%), Gaps = 4/194 (2%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||||||||| | |||| ||||||||| ||||| ||||| || |||| | ||
Sbjct 772349 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCC 772290
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
||||| ||||| ||||||||||| || || ||||| || | || | ||||| |||||
Sbjct 772289 TCCAGCTGCTTGCCGGCGAAGATAAGGCGCTGCTGATCAGGGGGGATACCCTCTTTGTCC 772230
Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943
| || || || || || || || || | || || ||||||||| | ||| || |
Sbjct 772229 TGGATCTTCTGCTTCAC--ATTCTCGATGGTGTCCGAGGGCTCGACATCGAGGGTGATAG 772172
Query 34944 TCTTTCCCGTGAGG 34957
||| | | ||| ||
Sbjct 772171 TCTGTTCGGTGGGG 772158
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325691521859318
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |