Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945.
1_202015-01-15] 322 sequences; 39,089,698 total letters
Query= NC_023442.1
Length=120420
Score E
Sequences producing significant alignments: (Bits) Value
seq7 118 8e-22
>seq7
Length=852142
Score = 118 bits (130), Expect = 8e-22
Identities = 155/215 (72%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631
|| ||||||| || ||||| || || || || ||||| || || || ||||| |
Sbjct 77931 CGGAGCACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTAAGTGTGCGGCCA 77872
Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691
|| ||||| || |||||||| | || | | |||||||| || ||||||||||| |||
Sbjct 77871 TCCTCGAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGATCAGGGGGAATACCCTCCTTG 77812
Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751
|| || | || || ||||| | || | ||||| || | || || || ||||| |||
Sbjct 77811 TCCTGGATCTTCTGCTTGACGTTCTCAATCGTGTCCGAGGGCTCGACATCGAGAGTAATA 77752
Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|| |||||||| | || || ||||| ||||||||
Sbjct 77751 GTCTTGCCAGTCAGAGTCTTGACAAAGATCTGCAT 77717
Score = 104 bits (114), Expect = 2e-17
Identities = 152/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631
|| ||||| | || || || || || || || ||||| || || || |||||
Sbjct 77475 CGGAGCACAAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTAAGCGTGCGGCCG 77416
Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691
|| ||||| || |||||||| | || | | |||||||| || ||||||||||| |||
Sbjct 77415 TCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGAATACCCTCCTTG 77356
Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751
|| || | || || ||||| | || | ||||| || | || || || ||||| |||
Sbjct 77355 TCCTGAATCTTCTGCTTGACGTTCTCAATGGTGTCCGAGGGCTCGACATCGAGAGTAATA 77296
Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|| |||||||| | || || ||||| ||||||||
Sbjct 77295 GTCTTGCCAGTCAGAGTCTTGACAAAGATCTGCAT 77261
Score = 91.5 bits (100), Expect = 1e-13
Identities = 149/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631
|| ||||| | || || ||||| || || || ||||| || || | |||||
Sbjct 77703 CGGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCG 77644
Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691
|| ||||| || ||||| || | || | | |||||||| || ||||||||||| ||
Sbjct 77643 TCCTCGAGCTGCTTGCCTGCGAAGATGAGACGCTGCTGATCAGGGGGAATACCCTCCTTA 77584
Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751
|| || | || || ||||| | || | ||||| ||| | || || ||||| || ||
Sbjct 77583 TCCTGGATCTTCTGCTTGACGTTCTCAATGGTGTCCGAAGGCTCGACATCAAGGGTGATG 77524
Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|| ||||| || | ||| || || || ||||||||
Sbjct 77523 GTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 77489
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 385217688255402
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |