Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945.
1_202015-01-15] 322 sequences; 39,089,698 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq61 217 1e-51
seq7 84.2 2e-11
>seq61
Length=193651
Score = 217 bits (240), Expect = 1e-51
Identities = 635/968 (66%), Gaps = 25/968 (3%)
Strand=Plus/Minus
Query 147462 GATAGACGCCAGATTGCAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGC 147521
||| || ||||| ||||| || || ||| || | | | |||||| | ||| || |
Sbjct 58570 GATCGAGGCCAGGTTGCAAACAGCGACCTCATCCGGGGCAGTGTACTCGATGATCTCCGT 58511
Query 147522 GCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGC 147581
||| ||||| | | || |||| || | || | ||| || || || ||||| ||
Sbjct 58510 GCAGAGGTTCGAGGACTTGATGATGCCAAGGTTCTTCTGGTTCGACTTGCGGTTGCATGC 58451
Query 147582 GTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAAC-GATAAACCTAT 147640
||| ||||| ||||| | || | || ||||||| || || | || || | |
Sbjct 58450 GTCCTTGAAAAGCATAAAGGGCACACCCGTCTCGATCTGG----CAGCTGAGAATCTGGT 58395
Query 147641 GC---AGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGT 147697
| |||||||| || |||| | || ||| ||| ||||| || ||||| |||||||
Sbjct 58394 ACCAGAGGTCCTGGGCGCGCATCGTCTTGCGACCGCGACCCTCCTTCTCGTAGCGCTCGT 58335
Query 147698 ACAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACACA 147757
| | | || ||||||||||| ||| || | || || || | ||| || |
Sbjct 58334 AGAGCTCCTTGAACTCGTCGCCATAGACGTCCGAGAGCCCCTTGGCCTCGTTCGGGCAAA 58275
Query 147758 TCAGCGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCG 147817
|||| ||| || || ||| | ||||| ||| || || || || ||||| ||||
Sbjct 58274 AGAGCGTCCAGGTGCTGTTCGCCTCGACGCGCTCCATGAAAAGGTCAGGGACCCAGAGCG 58215
Query 147818 CGTACATAAGATCGCGCGCTTTGCAATCCTCGGCGCCCATGTT---GCGTTTCAAATTAA 147874
|||| | || |||||||| | ||||| || ||| ||| | | |||
Sbjct 58214 CGTAAAAGAGGTCGCGCGCGCGGTTCTCCTCCTTACCGTGGTTCTTGCGGAGCTCAATAA 58155
Query 147875 GCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGCT 147934
| || | || |||||| |||||||| |||| ||| | ||| | | || || ||||
Sbjct 58154 --AGTCT-TCGACGTCGGCATGCCAGGGCTCAAGGTACATGGCAAAGGAGCCCTTGCGCT 58098
Query 147935 TTCCGCC---CTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCA 147991
| ||||| |||||| || | ||| || ||| ||| || ||||||| |||||| | |
Sbjct 58097 TGCCGCCGCCCTGGTCCACGTAGCGGGCCGTGTCGTTGAAGACGCGCAGCATGGGCACGA 58038
Query 147992 GGCCGCTCGCAGTGCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCA 148051
|||| | | ||||||||||| | | ||| || || || | | ||| |
Sbjct 58037 TGCCGTTGGACTTGCCGTTGGTGCCGGCCACGTAGCTTCCCGAAGCGCGAATGTTGTGGA 57978
Query 148052 CGTTAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAATCGCCCAATGTCGTGT 148111
||| || |||||||||||| ||||||| || ||| ||||| | | ||| |
Sbjct 57977 TGTTGACACCAATGCCGCCGGCGTACTTGGAGATGCGCGCGCACGTCTCGAGCGTCTGGA 57918
Query 148112 AGATGCCGTCGATGCTGTCGTTTTTGACGC---CAAGCAAAAAACACGAACACATTTGCG 148168
||||||| || || ||||| || | | | || || | | ||| ||| ||||
Sbjct 57917 AGATGCCCTCAATCGAGTCGTCCTTCATGTGCACGAGGAAGCAGCTCGA---CATCTGCG 57861
Query 148169 GAATCCGCGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCA 148228
| | | || || || ||| || ||||| | ||||||||||| || ||||| ||
Sbjct 57860 GGCGCGGGGTACCGGCGTTGAAGAGCGTGGGCGTGGCGTGCGTAAAGAACTTTTGCGACA 57801
Query 148229 TCATGCGATACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGC 148288
||||| || |||||||| || || ||||| || ||| || |||| | ||| |
Sbjct 57800 TCATGTTGTAGGTCTCAATGGCACGGTCAATGTCTTCCTTGTGGATACCCACAGAGACAC 57741
Query 148289 GCATGAGCATGTGCTGTGGTCGTTCGGCAA-CTTGATTGTTGATCTTGAGAAGATATCCA 148347
|||||||||| ||||| || || ||||||| |||| | ||||| |||||| || ||
Sbjct 57740 GCATGAGCATCTGCTGGGGGCGCTCGGCAATCTTG-TCGTTGACCTTGAGCAGGTACGAG 57682
Query 148348 TTTTCGAGGGTTTTGTAACCAAAGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGGCC 148407
||||| || ||| | |||||||| | ||| || || || ||||||| || |||
Sbjct 57681 CGCTCGAGCGTCTTGAAGCCAAAGTAGTCGTACTCGAAGTCGCGCTCGTACTTGACGGCG 57622
Query 148408 GCATCTAG 148415
|| || ||
Sbjct 57621 GCGTCGAG 57614
>seq7
Length=852142
Score = 84.2 bits (92), Expect = 2e-11
Identities = 135/194 (70%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989
||||| || || |||||||||||||| | || || || |||||||| || || |
Sbjct 76998 GACTCCTTCTGGATGTTGTAGTCGCTAAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCG 76939
Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049
|||| |||||||| ||||| || || ||||| || ||||| || || || || |
Sbjct 76938 AAGATGAGACGCTGCTGATCAGGGGGAATGCCCTCCTTATCCTGGATCTTCTGCTTGACG 76879
Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109
| || | ||| || | ||||| || || | || | ||||| || || || || ||
Sbjct 76878 TTCTCAATAGTGTCCGAAGGCTCGACATCAAGGGTGATGGTTTTGCCCGTGAGGGTCTTA 76819
Query 132110 ATGAAAATCTGCAT 132123
| ||| ||||||||
Sbjct 76818 ACGAAGATCTGCAT 76805
Score = 84.2 bits (92), Expect = 2e-11
Identities = 135/194 (70%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989
||||| || || |||||||||||||| | || || || |||||||| || || |
Sbjct 77226 GACTCCTTCTGGATGTTGTAGTCGCTAAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCG 77167
Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049
|||| |||||||| ||||| || || || || || ||||| ||| || || || |
Sbjct 77166 AAGATGAGACGCTGCTGATCAGGGGGGATACCCTCCTTATCCTGAATCTTCTGCTTGACG 77107
Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109
| || | || || | ||||| || || | || | || || || || ||||| |||
Sbjct 77106 TTCTCAATGGTGTCCGAAGGCTCGACATCAAGGGTGATGGTCTTGCCGGTGAGAGTCTTT 77047
Query 132110 ATGAAAATCTGCAT 132123
| |||||||||||
Sbjct 77046 ACAAAAATCTGCAT 77033
Score = 84.2 bits (92), Expect = 2e-11
Identities = 135/194 (70%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989
||||| || || |||||||||||||| | || || || |||||||| || || |
Sbjct 77454 GACTCCTTCTGGATGTTGTAGTCGCTAAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCG 77395
Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049
|||| |||||||| ||||| || || || || || || || ||| || || || |
Sbjct 77394 AAGATGAGACGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTGAATCTTCTGCTTGACG 77335
Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109
| || | || || | ||||| || |||| || | || || ||||||||||| ||
Sbjct 77334 TTCTCAATGGTGTCCGAGGGCTCGACATCGAGAGTAATAGTCTTGCCAGTCAGAGTCTTG 77275
Query 132110 ATGAAAATCTGCAT 132123
| || ||||||||
Sbjct 77274 ACAAAGATCTGCAT 77261
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476609281639920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |