Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945. 1_202015-01-15] 322 sequences; 39,089,698 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq61 217 1e-51 seq7 84.2 2e-11 >seq61 Length=193651 Score = 217 bits (240), Expect = 1e-51 Identities = 635/968 (66%), Gaps = 25/968 (3%) Strand=Plus/Minus Query 147462 GATAGACGCCAGATTGCAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGC 147521 ||| || ||||| ||||| || || ||| || | | | |||||| | ||| || | Sbjct 58570 GATCGAGGCCAGGTTGCAAACAGCGACCTCATCCGGGGCAGTGTACTCGATGATCTCCGT 58511 Query 147522 GCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGC 147581 ||| ||||| | | || |||| || | || | ||| || || || ||||| || Sbjct 58510 GCAGAGGTTCGAGGACTTGATGATGCCAAGGTTCTTCTGGTTCGACTTGCGGTTGCATGC 58451 Query 147582 GTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAAC-GATAAACCTAT 147640 ||| ||||| ||||| | || | || ||||||| || || | || || | | Sbjct 58450 GTCCTTGAAAAGCATAAAGGGCACACCCGTCTCGATCTGG----CAGCTGAGAATCTGGT 58395 Query 147641 GC---AGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGT 147697 | |||||||| || |||| | || ||| ||| ||||| || ||||| ||||||| Sbjct 58394 ACCAGAGGTCCTGGGCGCGCATCGTCTTGCGACCGCGACCCTCCTTCTCGTAGCGCTCGT 58335 Query 147698 ACAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACACA 147757 | | | || ||||||||||| ||| || | || || || | ||| || | Sbjct 58334 AGAGCTCCTTGAACTCGTCGCCATAGACGTCCGAGAGCCCCTTGGCCTCGTTCGGGCAAA 58275 Query 147758 TCAGCGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCG 147817 |||| ||| || || ||| | ||||| ||| || || || || ||||| |||| Sbjct 58274 AGAGCGTCCAGGTGCTGTTCGCCTCGACGCGCTCCATGAAAAGGTCAGGGACCCAGAGCG 58215 Query 147818 CGTACATAAGATCGCGCGCTTTGCAATCCTCGGCGCCCATGTT---GCGTTTCAAATTAA 147874 |||| | || |||||||| | ||||| || ||| ||| | | ||| Sbjct 58214 CGTAAAAGAGGTCGCGCGCGCGGTTCTCCTCCTTACCGTGGTTCTTGCGGAGCTCAATAA 58155 Query 147875 GCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGCT 147934 | || | || |||||| |||||||| |||| ||| | ||| | | || || |||| Sbjct 58154 --AGTCT-TCGACGTCGGCATGCCAGGGCTCAAGGTACATGGCAAAGGAGCCCTTGCGCT 58098 Query 147935 TTCCGCC---CTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCA 147991 | ||||| |||||| || | ||| || ||| ||| || ||||||| |||||| | | Sbjct 58097 TGCCGCCGCCCTGGTCCACGTAGCGGGCCGTGTCGTTGAAGACGCGCAGCATGGGCACGA 58038 Query 147992 GGCCGCTCGCAGTGCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCA 148051 |||| | | ||||||||||| | | ||| || || || | | ||| | Sbjct 58037 TGCCGTTGGACTTGCCGTTGGTGCCGGCCACGTAGCTTCCCGAAGCGCGAATGTTGTGGA 57978 Query 148052 CGTTAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAATCGCCCAATGTCGTGT 148111 ||| || |||||||||||| ||||||| || ||| ||||| | | ||| | Sbjct 57977 TGTTGACACCAATGCCGCCGGCGTACTTGGAGATGCGCGCGCACGTCTCGAGCGTCTGGA 57918 Query 148112 AGATGCCGTCGATGCTGTCGTTTTTGACGC---CAAGCAAAAAACACGAACACATTTGCG 148168 ||||||| || || ||||| || | | | || || | | ||| ||| |||| Sbjct 57917 AGATGCCCTCAATCGAGTCGTCCTTCATGTGCACGAGGAAGCAGCTCGA---CATCTGCG 57861 Query 148169 GAATCCGCGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCA 148228 | | | || || || ||| || ||||| | ||||||||||| || ||||| || Sbjct 57860 GGCGCGGGGTACCGGCGTTGAAGAGCGTGGGCGTGGCGTGCGTAAAGAACTTTTGCGACA 57801 Query 148229 TCATGCGATACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGC 148288 ||||| || |||||||| || || ||||| || ||| || |||| | ||| | Sbjct 57800 TCATGTTGTAGGTCTCAATGGCACGGTCAATGTCTTCCTTGTGGATACCCACAGAGACAC 57741 Query 148289 GCATGAGCATGTGCTGTGGTCGTTCGGCAA-CTTGATTGTTGATCTTGAGAAGATATCCA 148347 |||||||||| ||||| || || ||||||| |||| | ||||| |||||| || || Sbjct 57740 GCATGAGCATCTGCTGGGGGCGCTCGGCAATCTTG-TCGTTGACCTTGAGCAGGTACGAG 57682 Query 148348 TTTTCGAGGGTTTTGTAACCAAAGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGGCC 148407 ||||| || ||| | |||||||| | ||| || || || ||||||| || ||| Sbjct 57681 CGCTCGAGCGTCTTGAAGCCAAAGTAGTCGTACTCGAAGTCGCGCTCGTACTTGACGGCG 57622 Query 148408 GCATCTAG 148415 || || || Sbjct 57621 GCGTCGAG 57614 >seq7 Length=852142 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || |||||||||||||| | || || || |||||||| || || | Sbjct 76998 GACTCCTTCTGGATGTTGTAGTCGCTAAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCG 76939 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||| ||||| || || ||||| || ||||| || || || || | Sbjct 76938 AAGATGAGACGCTGCTGATCAGGGGGAATGCCCTCCTTATCCTGGATCTTCTGCTTGACG 76879 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | ||| || | ||||| || || | || | ||||| || || || || || Sbjct 76878 TTCTCAATAGTGTCCGAAGGCTCGACATCAAGGGTGATGGTTTTGCCCGTGAGGGTCTTA 76819 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 76818 ACGAAGATCTGCAT 76805 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || |||||||||||||| | || || || |||||||| || || | Sbjct 77226 GACTCCTTCTGGATGTTGTAGTCGCTAAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCG 77167 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||| ||||| || || || || || ||||| ||| || || || | Sbjct 77166 AAGATGAGACGCTGCTGATCAGGGGGGATACCCTCCTTATCCTGAATCTTCTGCTTGACG 77107 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | ||||| || || | || | || || || || ||||| ||| Sbjct 77106 TTCTCAATGGTGTCCGAAGGCTCGACATCAAGGGTGATGGTCTTGCCGGTGAGAGTCTTT 77047 Query 132110 ATGAAAATCTGCAT 132123 | ||||||||||| Sbjct 77046 ACAAAAATCTGCAT 77033 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || |||||||||||||| | || || || |||||||| || || | Sbjct 77454 GACTCCTTCTGGATGTTGTAGTCGCTAAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCG 77395 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||| ||||| || || || || || || || ||| || || || | Sbjct 77394 AAGATGAGACGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTGAATCTTCTGCTTGACG 77335 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | ||||| || |||| || | || || ||||||||||| || Sbjct 77334 TTCTCAATGGTGTCCGAGGGCTCGACATCGAGAGTAATAGTCTTGCCAGTCAGAGTCTTG 77275 Query 132110 ATGAAAATCTGCAT 132123 | || |||||||| Sbjct 77274 ACAAAGATCTGCAT 77261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476609281639920