Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945.
1_202015-01-15] 322 sequences; 39,089,698 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq30 275 9e-68
seq61 250 4e-60
seq39 150 3e-30
seq36 150 3e-30
seq108 140 5e-27
seq7 132 7e-25
>seq30
Length=443502
Score = 275 bits (304), Expect = 9e-68
Identities = 420/593 (71%), Gaps = 14/593 (2%)
Strand=Plus/Minus
Query 1455722 CTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGGATATGG 1455781
|| |||| || |||||| |||||||||| |||||||| |||| ||||| || |||
Sbjct 288974 CTTCTGCAGGACAACCCGGACCGCTTTGTGCTGTTCCCTATCCAGCACCAGGATATCTGG 288915
Query 1455782 GAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGC 1455841
|| |||| || |||||||||||||| || ||||| || |||||||||||||| |||
Sbjct 288914 GACGCGTAC-AAGAAGGCCGAGGCCTCGTTCTGGACGGCTGAGGAGGTCGACCTGGGCCA 288856
Query 1455842 CGACACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCT 1455901
|| | | ||| | ||| ||| | | | ||||| || || |||||||||| ||
Sbjct 288855 GGATCAGCGCGACTTTGACTCGATGACCAAGGGCGAGCAGCACTTTGTCAAGCACGTGCT 288796
Query 1455902 CGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGA 1455961
|| || ||| || || || |||||||| ||||||| ||| | |||| |
Sbjct 288795 GGCGTTCTTT-GCTTCCTCGGACGGCATCGTCCTCGAGAACGTGGTGGAGAACTTTTGTA 288737
Query 1455962 AAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACA 1456021
||||| |||| ||||| || | |||||||| |||||||| |||||||| ||||
Sbjct 288736 GTGAGGTGAGTGTGCCGGAGGCGCGCTGCTTTTACGGCTTCCAGATGGCCATCGAGAACA 288677
Query 1456022 TCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGG 1456081
| || | || |||||||| || |||||||||||| | |||| |||||||
Sbjct 288676 TTCATGCCGAGGTGTACTCGCTGCTCATCGACACCTACATTCGCGACCGCACCGAGAAGC 288617
Query 1456082 ACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGA 1456141
|| || || ||| | || |||||| ||| || | ||||| | |||||||
Sbjct 288616 ACAGTCTTTTCAATGCCCTTACGACTTTGCCGTGCGTGCGGGAGAAGGCGCAGTGGGCGA 288557
Query 1456142 TGAAGTGGATCAACAAGGAGGGC----CTCGACACTTTGCCGAGCGGCTCGTCGGCTTTG 1456197
| | | ||| ||| ||| | | |||||| ||||| || || |||||||
Sbjct 288556 T------GCGCTACATGGACGGCAACATTTGCACCTTTGCTGAGCGCCTTGTTGGCTTTG 288503
Query 1456198 CCG-CGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGC 1456256
||| ||| || |||||||| || || ||| ||||||||| |||||||||||||||||||
Sbjct 288502 CCGCCGTGGAAGGCATCTTCTTTTCTGGCTCTTTCTGCGCGATCTTTTGGCTCAAGAAGC 288443
Query 1456257 GCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGACGA 1456309
||||||||||| |||| | || |||| |||||| | ||||| ||||||||
Sbjct 288442 GCGGCCTCATG-CCGGGCCTCACCTTTTCCAACGAGCTCATCAGCCGCGACGA 288391
Score = 118 bits (130), Expect = 2e-20
Identities = 221/317 (70%), Gaps = 16/317 (5%)
Strand=Plus/Minus
Query 1456452 TGCACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGCCGTCGA---CCG 1456508
||||| ||||||||| || || |||| | | |||| | || ||| ||| ||
Sbjct 288385 TGCACACTGACTTTGCTTGCCTCCTCTTCCGCAAGCTCCGCCACCCGCCCTCGGAGGCCC 288326
Query 1456509 ACGTGCCCAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGT 1456568
||||| | || ||||||| ||||||||| || ||| ||||| || |||
Sbjct 288325 GCGTGCGCGAG---ATCATCGAGTCGGCCGTCGACATTGAGTGCGAGTTCATCTCCGACG 288269
Query 1456569 CGCTGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTT 1456628
|||| || || | ||| |||||||||||| | ||| |||||| ||||||| | || ||
Sbjct 288268 CGCTCCCCGTCGAGCTTATCGGCATGAACTCTACC-CTCATGCAGCAGTACA-TCAAGTT 288211
Query 1456629 TGTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAG--CACTACCGGACGGC-CA 1456685
||| || ||||| ||| || | ||||||||| ||| || | ||| || |
Sbjct 288210 TGTGGCTGACCGTCTGGTCAAGTCGCTCGGCT----TTAAGGCCATTTACGGCGTGCAAA 288155
Query 1456686 ACCCGTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCC 1456745
|||| || |||||||| | |||||| | ||||||||||||||||||| || |
Sbjct 288154 ACCCCTTTGACTGGATGGACCTCATCTCGATGCAGGGCAAGACCAACTTTTTTGAAAAGC 288095
Query 1456746 GCG-TGGCGAGTACGCC 1456761
||| |||||||||||||
Sbjct 288094 GCGTTGGCGAGTACGCC 288078
>seq61
Length=193651
Score = 250 bits (276), Expect = 4e-60
Identities = 361/507 (71%), Gaps = 23/507 (5%)
Strand=Plus/Plus
Query 259683 ACAAGGAGGTCCTCGACGCTGCCATCTGCCACGGCCGAGACTTTGGCTACTCGTACTTTG 259742
|||||||| |||||||| ||| || ||| || ||||| | ||| |||||||
Sbjct 57603 ACAAGGAGCGTCTCGACGCCGCCGTCAAGTACGAGCGCGACTTCGAGTACGACTACTTTG 57662
Query 259743 GTCTGGCGAC-CTTGCGCCGGTCCTACCTGACCAAAGTGCGCGATATTGTCGTCGAGCGG 259801
| | ||| || | || | || |||||| ||| || ||| | | | ||||||
Sbjct 57663 GCTTCAAGACGCTCGAGC-GCTCGTACCTGCTCAAGGTCAACGACAAGATTGCCGAGCGC 57721
Query 259802 CCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGC-CGACGTCGACAA 259860
|||||| | ||||||||||||||| | | ||||| | | | | | ||||
Sbjct 57722 CCCCAGCAGATGCTCATGCGTGTCTC----------TGTGGGTATCCACAAGGAAGACAT 57771
Query 259861 TGCGCTGGAGCACGTGC--TCGCCACCTACGAGGCCATGTCGCAGCAGTTGTTCACCTCA 259918
|| | |||| | | |||||| | |||||||| |||| || ||
Sbjct 57772 TGACC--------GTGCCATTGAGACCTACAACATGATGTCGCAAAAGTTCTTTACGCAC 57823
Query 259919 GCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTG 259978
|| |||||||||||||| || ||||| || ||||||||||||| ||| ||||| ||
Sbjct 57824 GCCACGCCCACGCTCTTCAACGCCGGTACCCCGCGCCCGCAGATGTCGAGCTGCTTCCTC 57883
Query 259979 TTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTC 260038
|| ||||||||| ||| ||||| |||||||||| | |||||| || |||||||| |
Sbjct 57884 GTGCACATGAAGGACGACTCGATTGAGGGCATCTTCCAGACGCTCGAGACGTGCGCGCGC 57943
Query 260039 ATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCC 260098
||||||||| ||||||||||| ||| | | ||||| | ||||| |||| |
Sbjct 57944 ATCTCCAAGTACGCCGGCGGCATTGGTGTCAACATCCACAACATTCGCGCTTCGGGAAGC 58003
Query 260099 TACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAAC 260158
|||||||| |||||||||||| ||||||||||| | ||||||||||| ||||| || |||
Sbjct 58004 TACGTGGCCGGCACCAACGGCAAGTCCAACGGCATCGTGCCCATGCTGCGCGTCTTCAAC 58063
Query 260159 GACACGGCGCGCTACGTCGACCAGTGC 260185
|||||||| |||||||| |||||| ||
Sbjct 58064 GACACGGCCCGCTACGTGGACCAGGGC 58090
Score = 219 bits (242), Expect = 6e-51
Identities = 354/505 (70%), Gaps = 12/505 (2%)
Strand=Plus/Plus
Query 262912 CAGCATGGCCTGCGCAACTCGTTGCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAG 262971
||||| ||| | || |||||| | || || |||| ||||||||||||| | || ||||||
Sbjct 59000 CAGCACGGCGTACGTAACTCGCTCCTTGTCGCGCCCATGCCCACGGCCTCAACTTCGCAG 59059
Query 262972 ATCCTGGGCAACACCGAGGCGTTCGAGGTCATCACGAGCAACATCTACACGCGCCGCGTG 263031
|| || || ||| |||||| || ||| | || |||||||| ||| ||||||||||
Sbjct 59060 ATTCTCGGAAACTGCGAGGCCTTTGAGCCTTTTACCAGCAACATGTACTCGCGCCGCGTT 59119
Query 263032 CTCTCGGGCGACTTTACCGTGGTCAACCGCCACCTGGTCAAGCGCATGGTGGCGCGCGGC 263091
||| | ||||| || | ||| || ||| |||||||||||| | | | | ||||||
Sbjct 59120 CTCGCCGGCGAGTTCAACGTCGTTAACGCGCACCTGGTCAAGGACCTCATCTCTCGCGGC 59179
Query 263092 CTGTGGACGCCCGACTTTCGCGACCGGCTCATTGCGGCACAGGGCTCGGTGCAGGGCTTT 263151
|| |||||||| || ||||| ||| |||| || | | || ||||||||| | |
Sbjct 59180 CTCTGGACGCCTGAGATTCGCAACCACATCATGGCCGATCGCGGTTCGGTGCAGAACATC 59239
Query 263152 GACGACGAGGAGGTGCCGCCCGATCTCAAGGCTCTCTTCAAGACCGTGTGGGAGGTGCCC 263211
|| | | ||| || |||||||| || | |||||| ||||||||| | |
Sbjct 59240 TCCGTC------ATCCCGGATGACCTCAAGGCACTTTACAAGACGGTGTGGGAGAT--CA 59291
Query 263212 AACCGGGTGAC--CATTGATATGGCGGCCGACCGCGCGCCCTATGTCGACCAGAGCCAGT 263269
| | | || | |||||| | ||||||||||| | ||| | | |||||| ||||
Sbjct 59292 AGCAGCGTTGCCTCATTGACCTTGCGGCCGACCGTGGTGCCTTTATTGACCAGTCGCAGT 59351
Query 263270 CGCTCAACCTGTACCTCGCCGA-CCCGACGGCCGAGAGCATCACGTCGATGCACGCCTAT 263328
|||||||| | ||| | ||||| || ||| | ||| |||| ||| ||| ||
Sbjct 59352 CGCTCAACATTTACATGGCCGAGGCCAACGTTGGCAAGC-TCACTTCGTGCCACTTTTAC 59410
Query 263329 GCGTGGCGTCGCGGCCTCAAGACTGGCATGTACTATCTGCGCACCCGGCCCGCTGCCAAC 263388
||||| |||||||||||||| || | ||||| ||||| || || ||| || |
Sbjct 59411 TCGTGGAAGCGCGGCCTCAAGACGGGTCTCTACTACCTGCGTACGCGCCCCAAGGCGGAT 59470
Query 263389 GCCATTCAATTCACCGTCGATCAGG 263413
|||||||| |||||| | || ||||
Sbjct 59471 GCCATTCAGTTCACCATTGACCAGG 59495
Score = 120 bits (132), Expect = 4e-21
Identities = 155/211 (73%), Gaps = 10/211 (5%)
Strand=Plus/Plus
Query 261788 GGCGGCGGCAAGCGCAAGGGCGCCTTTGCCTGCTACCTGGAACCGTGGCACGCCGACCTC 261847
||||||||||||||||||||| |||||||| ||||| || || ||||| |||||| ||
Sbjct 58088 GGCGGCGGCAAGCGCAAGGGCTCCTTTGCCATGTACCTTGAGCCCTGGCATGCCGACGTC 58147
Query 261848 ATCAACTGGCTGGACCTCAAAAAGAACCACGGCAAGGGAGGGGGAGAACCGGGCGCGCGC 261907
||| | || ||| ||||||||||| | ||| |||||||| ||||||||
Sbjct 58148 GAAGACTTTATTGAGCTCCGCAAGAACCACGGTA----AGGAGGAGAACC--GCGCGCGC 58201
Query 261908 GATCTCTTTTACGGCCTGTGGACGTGC--GACCTGTTTATGCGCCGCATGGTGACCGGCC 261965
|| |||||||||| || ||| || | ||||| || ||| ||| | | | | |
Sbjct 58202 GACCTCTTTTACGCGCTCTGG--GTCCCTGACCTTTTCATGGAGCGCGTCGAGGCGAACA 58259
Query 261966 GCGACTGGTCGCTCTTTTGCCCGTCCGAGGC 261996
|| |||| |||||||||||||| ||||||
Sbjct 58260 GCACCTGGACGCTCTTTTGCCCGAACGAGGC 58290
>seq39
Length=335683
Score = 150 bits (166), Expect = 3e-30
Identities = 185/247 (75%), Gaps = 12/247 (5%)
Strand=Plus/Plus
Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958
||||| || | || ||||||||||||||||||||||||||| |||| | |||
Sbjct 7044 TACTCCTCGTACATTTACAAGGTGCTCAAGCAGGTGCACCCCGACACCGGT-----ATC- 7097
Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018
||||| ||||||||| ||||||||||| || |||||||| | | || ||| ||| |
Sbjct 7098 TCCAAGAAGTCCATGAGCATCATGAACTCCTTCATCAACGACGTCTTTGAGCGCCTCGCC 7157
Query 725019 ACCGAGGCCGGTCGCCT-GGCGCGCTCCA--ACAAGCGCAACACGATCGGCACGCGCGAG 725075
|||||||||||| || ||| | | | ||||| || || | || | ||||||||
Sbjct 7158 ACCGAGGCCGGTAAGCTCGGCAAGTACAATGACAAG-GCTACCCTCTC--CTCGCGCGAG 7214
Query 725076 ATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAG 725135
||||||||||||| ||||| | | | ||| || || |||| ||||||||| || |||
Sbjct 7215 GTCCAGACCGCCGTCCGCCTCGTGCTTCCCGGTGAGCTCGCCAAGCACGCCGTTTCGGAG 7274
Query 725136 GGCACCA 725142
|||||||
Sbjct 7275 GGCACCA 7281
>seq36
Length=356773
Score = 150 bits (166), Expect = 3e-30
Identities = 185/247 (75%), Gaps = 12/247 (5%)
Strand=Plus/Minus
Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958
||||| || | || ||||||||||||||||||||||||||| |||| | |||
Sbjct 127489 TACTCCTCTTACATTTACAAGGTGCTCAAGCAGGTGCACCCCGACACCGGT-----ATC- 127436
Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018
||||| ||||||||| ||||||||||| || |||||||| | |||| ||| ||| |
Sbjct 127435 TCCAAGAAGTCCATGAGCATCATGAACTCCTTCATCAACGACGTCTTCGAGCGCCTCGCC 127376
Query 725019 ACCGAGGCCGGTCGCCT-GGCGCGCTCCA--ACAAGCGCAACACGATCGGCACGCGCGAG 725075
||||||||||| || ||| | | | ||||| || || | || | ||||||||
Sbjct 127375 ACCGAGGCCGGCAAGCTCGGCAAGTACAACGACAAG-GCCACCCTCTC--CTCGCGCGAG 127319
Query 725076 ATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAG 725135
||||||||||||| ||||| | | | ||| || || |||| ||||||||| || |||
Sbjct 127318 GTCCAGACCGCCGTCCGCCTCGTGCTTCCCGGTGAGCTCGCCAAGCACGCCGTTTCGGAG 127259
Query 725136 GGCACCA 725142
|||||||
Sbjct 127258 GGCACCA 127252
>seq108
Length=54964
Score = 140 bits (154), Expect = 5e-27
Identities = 278/402 (69%), Gaps = 15/402 (4%)
Strand=Plus/Plus
Query 165531 GAGGTCGACGACGCCCTTTGTGTGGTCATGCGCGCCTATGTCGAAAAGCCGCGCACGACC 165590
||| ||| ||| | | ||| ||| |||||||| | || | |||||||| || || |||
Sbjct 3099 GAGTTCGCCGAGGACATTTTTGTCGTCATGCGTGTGTACTTTGAAAAGCCCCGTACCACC 3158
Query 165591 GTTGGATGGAAGGGCCTGGCCAGTGACCCCGATCTTGATGGCTCGTGCCGCCTGGCTGAT 165650
|| || ||||||||||| | || || || || ||||| | | | | |
Sbjct 3159 GTCGGCTGGAAGGGCCTCATTAACGATCCGGACCTCAATGGCACCTTTAACATCAACAAG 3218
Query 165651 GGCCTTGATACATCGCGCCGCCTGCTGCGTGATCTCGTCGTCGACG---TCGACCAACCC 165707
||||| |||||| ||| | ||| | | |||| | || || ||| || |||
Sbjct 3219 GGCCTCCG--CATCGC-CCGTCAGCTCCTT---CTCGACATCAACACCCTCGGCCTCCCC 3272
Query 165708 GTGGCCGTCGAGTTTCTC-AGTCC-TCTGGTGGCCCCCTATTTGGCAGACCTGGTCACGT 165765
|||| | |||||||||| | ||| ||| | || || | | ||||| |||| |
Sbjct 3273 GTGGGCACCGAGTTTCTCGACTCCATCTCGCCGCAGTTTACCT--CTGACCTCATCACCT 3330
Query 165766 GGGGCGCCGTCGGTGCGCGCACCACCGAGAGCCAGGTGCACCGCGAGATGGCGTCGGCGC 165825
|||||||| |||| ||||||||||||||||| ||| | ||||||||| | || || | |
Sbjct 3331 GGGGCGCCATCGGGGCGCGCACCACCGAGAGTCAGATTCACCGCGAGCTCGCCTCCGGCC 3390
Query 165826 TGCCGCTGCCC-ATTGGCTTCAAAAACAGCACCGACGGCAGCGTGGCGACGGCCCTCGAT 165884
| || ||||| ||||||||||||||| |||| | ||||||||| || ||| ||||
Sbjct 3391 TTTCG-TGCCCGATTGGCTTCAAAAACGGCACTGGTGGCAGCGTGCAGATGGCTGTCGAC 3449
Query 165885 GCCGTGCGCACTGCCGCCCAGCCACACACCTTTCTCTGGGTC 165926
||| | || |||| || | || |||| || ||| |||||
Sbjct 3450 GCCATTAGCTCTGCGTCCAACCCGCACAGTTTCCTCGGGGTC 3491
>seq7
Length=852142
Score = 132 bits (146), Expect = 7e-25
Identities = 181/247 (73%), Gaps = 12/247 (5%)
Strand=Plus/Minus
Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958
|||||||| | || |||||||||||||||||||||||||| |||| | |||
Sbjct 811172 TACTCGTCGTACATTTACAAGGTGCTCAAGCAGGTGCACCCGGACACCGGT-----ATC- 811119
Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018
||||| ||||||||| ||||||||||| || ||||||| | |||| ||| ||| |
Sbjct 811118 TCCAAGAAGTCCATGAGCATCATGAACTCCTTCATCAACGATGTCTTCGAGCGCCTCGCC 811059
Query 725019 ACCGAGGCCGG-TCGCCTGGC--GCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAG 725075
|||||||| || || ||| | | | ||||| || || | || ||||||||
Sbjct 811058 ACCGAGGCTGGCAAGCTCGGCAAGTACAACGACAAG-GCTACCC--TCTCTTCGCGCGAG 811002
Query 725076 ATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAG 725135
||||||||||||| ||||| | | | || || || |||| ||||||||| || |||
Sbjct 811001 GTCCAGACCGCCGTCCGCCTTGTGCTTCCTGGTGAGCTCGCCAAGCACGCCGTGTCGGAG 810942
Query 725136 GGCACCA 725142
|||||||
Sbjct 810941 GGCACCA 810935
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177780142508164
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