Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945. 1_202015-01-15] 322 sequences; 39,089,698 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq30 275 9e-68 seq61 250 4e-60 seq39 150 3e-30 seq36 150 3e-30 seq108 140 5e-27 seq7 132 7e-25 >seq30 Length=443502 Score = 275 bits (304), Expect = 9e-68 Identities = 420/593 (71%), Gaps = 14/593 (2%) Strand=Plus/Minus Query 1455722 CTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGGATATGG 1455781 || |||| || |||||| |||||||||| |||||||| |||| ||||| || ||| Sbjct 288974 CTTCTGCAGGACAACCCGGACCGCTTTGTGCTGTTCCCTATCCAGCACCAGGATATCTGG 288915 Query 1455782 GAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGC 1455841 || |||| || |||||||||||||| || ||||| || |||||||||||||| ||| Sbjct 288914 GACGCGTAC-AAGAAGGCCGAGGCCTCGTTCTGGACGGCTGAGGAGGTCGACCTGGGCCA 288856 Query 1455842 CGACACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCT 1455901 || | | ||| | ||| ||| | | | ||||| || || |||||||||| || Sbjct 288855 GGATCAGCGCGACTTTGACTCGATGACCAAGGGCGAGCAGCACTTTGTCAAGCACGTGCT 288796 Query 1455902 CGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGA 1455961 || || ||| || || || |||||||| ||||||| ||| | |||| | Sbjct 288795 GGCGTTCTTT-GCTTCCTCGGACGGCATCGTCCTCGAGAACGTGGTGGAGAACTTTTGTA 288737 Query 1455962 AAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACA 1456021 ||||| |||| ||||| || | |||||||| |||||||| |||||||| |||| Sbjct 288736 GTGAGGTGAGTGTGCCGGAGGCGCGCTGCTTTTACGGCTTCCAGATGGCCATCGAGAACA 288677 Query 1456022 TCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGG 1456081 | || | || |||||||| || |||||||||||| | |||| ||||||| Sbjct 288676 TTCATGCCGAGGTGTACTCGCTGCTCATCGACACCTACATTCGCGACCGCACCGAGAAGC 288617 Query 1456082 ACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGA 1456141 || || || ||| | || |||||| ||| || | ||||| | ||||||| Sbjct 288616 ACAGTCTTTTCAATGCCCTTACGACTTTGCCGTGCGTGCGGGAGAAGGCGCAGTGGGCGA 288557 Query 1456142 TGAAGTGGATCAACAAGGAGGGC----CTCGACACTTTGCCGAGCGGCTCGTCGGCTTTG 1456197 | | | ||| ||| ||| | | |||||| ||||| || || ||||||| Sbjct 288556 T------GCGCTACATGGACGGCAACATTTGCACCTTTGCTGAGCGCCTTGTTGGCTTTG 288503 Query 1456198 CCG-CGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGC 1456256 ||| ||| || |||||||| || || ||| ||||||||| ||||||||||||||||||| Sbjct 288502 CCGCCGTGGAAGGCATCTTCTTTTCTGGCTCTTTCTGCGCGATCTTTTGGCTCAAGAAGC 288443 Query 1456257 GCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGACGA 1456309 ||||||||||| |||| | || |||| |||||| | ||||| |||||||| Sbjct 288442 GCGGCCTCATG-CCGGGCCTCACCTTTTCCAACGAGCTCATCAGCCGCGACGA 288391 Score = 118 bits (130), Expect = 2e-20 Identities = 221/317 (70%), Gaps = 16/317 (5%) Strand=Plus/Minus Query 1456452 TGCACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGCCGTCGA---CCG 1456508 ||||| ||||||||| || || |||| | | |||| | || ||| ||| || Sbjct 288385 TGCACACTGACTTTGCTTGCCTCCTCTTCCGCAAGCTCCGCCACCCGCCCTCGGAGGCCC 288326 Query 1456509 ACGTGCCCAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGT 1456568 ||||| | || ||||||| ||||||||| || ||| ||||| || ||| Sbjct 288325 GCGTGCGCGAG---ATCATCGAGTCGGCCGTCGACATTGAGTGCGAGTTCATCTCCGACG 288269 Query 1456569 CGCTGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTT 1456628 |||| || || | ||| |||||||||||| | ||| |||||| ||||||| | || || Sbjct 288268 CGCTCCCCGTCGAGCTTATCGGCATGAACTCTACC-CTCATGCAGCAGTACA-TCAAGTT 288211 Query 1456629 TGTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAG--CACTACCGGACGGC-CA 1456685 ||| || ||||| ||| || | ||||||||| ||| || | ||| || | Sbjct 288210 TGTGGCTGACCGTCTGGTCAAGTCGCTCGGCT----TTAAGGCCATTTACGGCGTGCAAA 288155 Query 1456686 ACCCGTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCC 1456745 |||| || |||||||| | |||||| | ||||||||||||||||||| || | Sbjct 288154 ACCCCTTTGACTGGATGGACCTCATCTCGATGCAGGGCAAGACCAACTTTTTTGAAAAGC 288095 Query 1456746 GCG-TGGCGAGTACGCC 1456761 ||| ||||||||||||| Sbjct 288094 GCGTTGGCGAGTACGCC 288078 >seq61 Length=193651 Score = 250 bits (276), Expect = 4e-60 Identities = 361/507 (71%), Gaps = 23/507 (5%) Strand=Plus/Plus Query 259683 ACAAGGAGGTCCTCGACGCTGCCATCTGCCACGGCCGAGACTTTGGCTACTCGTACTTTG 259742 |||||||| |||||||| ||| || ||| || ||||| | ||| ||||||| Sbjct 57603 ACAAGGAGCGTCTCGACGCCGCCGTCAAGTACGAGCGCGACTTCGAGTACGACTACTTTG 57662 Query 259743 GTCTGGCGAC-CTTGCGCCGGTCCTACCTGACCAAAGTGCGCGATATTGTCGTCGAGCGG 259801 | | ||| || | || | || |||||| ||| || ||| | | | |||||| Sbjct 57663 GCTTCAAGACGCTCGAGC-GCTCGTACCTGCTCAAGGTCAACGACAAGATTGCCGAGCGC 57721 Query 259802 CCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGC-CGACGTCGACAA 259860 |||||| | ||||||||||||||| | | ||||| | | | | | |||| Sbjct 57722 CCCCAGCAGATGCTCATGCGTGTCTC----------TGTGGGTATCCACAAGGAAGACAT 57771 Query 259861 TGCGCTGGAGCACGTGC--TCGCCACCTACGAGGCCATGTCGCAGCAGTTGTTCACCTCA 259918 || | |||| | | |||||| | |||||||| |||| || || Sbjct 57772 TGACC--------GTGCCATTGAGACCTACAACATGATGTCGCAAAAGTTCTTTACGCAC 57823 Query 259919 GCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTG 259978 || |||||||||||||| || ||||| || ||||||||||||| ||| ||||| || Sbjct 57824 GCCACGCCCACGCTCTTCAACGCCGGTACCCCGCGCCCGCAGATGTCGAGCTGCTTCCTC 57883 Query 259979 TTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTC 260038 || ||||||||| ||| ||||| |||||||||| | |||||| || |||||||| | Sbjct 57884 GTGCACATGAAGGACGACTCGATTGAGGGCATCTTCCAGACGCTCGAGACGTGCGCGCGC 57943 Query 260039 ATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCC 260098 ||||||||| ||||||||||| ||| | | ||||| | ||||| |||| | Sbjct 57944 ATCTCCAAGTACGCCGGCGGCATTGGTGTCAACATCCACAACATTCGCGCTTCGGGAAGC 58003 Query 260099 TACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAAC 260158 |||||||| |||||||||||| ||||||||||| | ||||||||||| ||||| || ||| Sbjct 58004 TACGTGGCCGGCACCAACGGCAAGTCCAACGGCATCGTGCCCATGCTGCGCGTCTTCAAC 58063 Query 260159 GACACGGCGCGCTACGTCGACCAGTGC 260185 |||||||| |||||||| |||||| || Sbjct 58064 GACACGGCCCGCTACGTGGACCAGGGC 58090 Score = 219 bits (242), Expect = 6e-51 Identities = 354/505 (70%), Gaps = 12/505 (2%) Strand=Plus/Plus Query 262912 CAGCATGGCCTGCGCAACTCGTTGCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAG 262971 ||||| ||| | || |||||| | || || |||| ||||||||||||| | || |||||| Sbjct 59000 CAGCACGGCGTACGTAACTCGCTCCTTGTCGCGCCCATGCCCACGGCCTCAACTTCGCAG 59059 Query 262972 ATCCTGGGCAACACCGAGGCGTTCGAGGTCATCACGAGCAACATCTACACGCGCCGCGTG 263031 || || || ||| |||||| || ||| | || |||||||| ||| |||||||||| Sbjct 59060 ATTCTCGGAAACTGCGAGGCCTTTGAGCCTTTTACCAGCAACATGTACTCGCGCCGCGTT 59119 Query 263032 CTCTCGGGCGACTTTACCGTGGTCAACCGCCACCTGGTCAAGCGCATGGTGGCGCGCGGC 263091 ||| | ||||| || | ||| || ||| |||||||||||| | | | | |||||| Sbjct 59120 CTCGCCGGCGAGTTCAACGTCGTTAACGCGCACCTGGTCAAGGACCTCATCTCTCGCGGC 59179 Query 263092 CTGTGGACGCCCGACTTTCGCGACCGGCTCATTGCGGCACAGGGCTCGGTGCAGGGCTTT 263151 || |||||||| || ||||| ||| |||| || | | || ||||||||| | | Sbjct 59180 CTCTGGACGCCTGAGATTCGCAACCACATCATGGCCGATCGCGGTTCGGTGCAGAACATC 59239 Query 263152 GACGACGAGGAGGTGCCGCCCGATCTCAAGGCTCTCTTCAAGACCGTGTGGGAGGTGCCC 263211 || | | ||| || |||||||| || | |||||| ||||||||| | | Sbjct 59240 TCCGTC------ATCCCGGATGACCTCAAGGCACTTTACAAGACGGTGTGGGAGAT--CA 59291 Query 263212 AACCGGGTGAC--CATTGATATGGCGGCCGACCGCGCGCCCTATGTCGACCAGAGCCAGT 263269 | | | || | |||||| | ||||||||||| | ||| | | |||||| |||| Sbjct 59292 AGCAGCGTTGCCTCATTGACCTTGCGGCCGACCGTGGTGCCTTTATTGACCAGTCGCAGT 59351 Query 263270 CGCTCAACCTGTACCTCGCCGA-CCCGACGGCCGAGAGCATCACGTCGATGCACGCCTAT 263328 |||||||| | ||| | ||||| || ||| | ||| |||| ||| ||| || Sbjct 59352 CGCTCAACATTTACATGGCCGAGGCCAACGTTGGCAAGC-TCACTTCGTGCCACTTTTAC 59410 Query 263329 GCGTGGCGTCGCGGCCTCAAGACTGGCATGTACTATCTGCGCACCCGGCCCGCTGCCAAC 263388 ||||| |||||||||||||| || | ||||| ||||| || || ||| || | Sbjct 59411 TCGTGGAAGCGCGGCCTCAAGACGGGTCTCTACTACCTGCGTACGCGCCCCAAGGCGGAT 59470 Query 263389 GCCATTCAATTCACCGTCGATCAGG 263413 |||||||| |||||| | || |||| Sbjct 59471 GCCATTCAGTTCACCATTGACCAGG 59495 Score = 120 bits (132), Expect = 4e-21 Identities = 155/211 (73%), Gaps = 10/211 (5%) Strand=Plus/Plus Query 261788 GGCGGCGGCAAGCGCAAGGGCGCCTTTGCCTGCTACCTGGAACCGTGGCACGCCGACCTC 261847 ||||||||||||||||||||| |||||||| ||||| || || ||||| |||||| || Sbjct 58088 GGCGGCGGCAAGCGCAAGGGCTCCTTTGCCATGTACCTTGAGCCCTGGCATGCCGACGTC 58147 Query 261848 ATCAACTGGCTGGACCTCAAAAAGAACCACGGCAAGGGAGGGGGAGAACCGGGCGCGCGC 261907 ||| | || ||| ||||||||||| | ||| |||||||| |||||||| Sbjct 58148 GAAGACTTTATTGAGCTCCGCAAGAACCACGGTA----AGGAGGAGAACC--GCGCGCGC 58201 Query 261908 GATCTCTTTTACGGCCTGTGGACGTGC--GACCTGTTTATGCGCCGCATGGTGACCGGCC 261965 || |||||||||| || ||| || | ||||| || ||| ||| | | | | | Sbjct 58202 GACCTCTTTTACGCGCTCTGG--GTCCCTGACCTTTTCATGGAGCGCGTCGAGGCGAACA 58259 Query 261966 GCGACTGGTCGCTCTTTTGCCCGTCCGAGGC 261996 || |||| |||||||||||||| |||||| Sbjct 58260 GCACCTGGACGCTCTTTTGCCCGAACGAGGC 58290 >seq39 Length=335683 Score = 150 bits (166), Expect = 3e-30 Identities = 185/247 (75%), Gaps = 12/247 (5%) Strand=Plus/Plus Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958 ||||| || | || ||||||||||||||||||||||||||| |||| | ||| Sbjct 7044 TACTCCTCGTACATTTACAAGGTGCTCAAGCAGGTGCACCCCGACACCGGT-----ATC- 7097 Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018 ||||| ||||||||| ||||||||||| || |||||||| | | || ||| ||| | Sbjct 7098 TCCAAGAAGTCCATGAGCATCATGAACTCCTTCATCAACGACGTCTTTGAGCGCCTCGCC 7157 Query 725019 ACCGAGGCCGGTCGCCT-GGCGCGCTCCA--ACAAGCGCAACACGATCGGCACGCGCGAG 725075 |||||||||||| || ||| | | | ||||| || || | || | |||||||| Sbjct 7158 ACCGAGGCCGGTAAGCTCGGCAAGTACAATGACAAG-GCTACCCTCTC--CTCGCGCGAG 7214 Query 725076 ATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAG 725135 ||||||||||||| ||||| | | | ||| || || |||| ||||||||| || ||| Sbjct 7215 GTCCAGACCGCCGTCCGCCTCGTGCTTCCCGGTGAGCTCGCCAAGCACGCCGTTTCGGAG 7274 Query 725136 GGCACCA 725142 ||||||| Sbjct 7275 GGCACCA 7281 >seq36 Length=356773 Score = 150 bits (166), Expect = 3e-30 Identities = 185/247 (75%), Gaps = 12/247 (5%) Strand=Plus/Minus Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958 ||||| || | || ||||||||||||||||||||||||||| |||| | ||| Sbjct 127489 TACTCCTCTTACATTTACAAGGTGCTCAAGCAGGTGCACCCCGACACCGGT-----ATC- 127436 Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018 ||||| ||||||||| ||||||||||| || |||||||| | |||| ||| ||| | Sbjct 127435 TCCAAGAAGTCCATGAGCATCATGAACTCCTTCATCAACGACGTCTTCGAGCGCCTCGCC 127376 Query 725019 ACCGAGGCCGGTCGCCT-GGCGCGCTCCA--ACAAGCGCAACACGATCGGCACGCGCGAG 725075 ||||||||||| || ||| | | | ||||| || || | || | |||||||| Sbjct 127375 ACCGAGGCCGGCAAGCTCGGCAAGTACAACGACAAG-GCCACCCTCTC--CTCGCGCGAG 127319 Query 725076 ATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAG 725135 ||||||||||||| ||||| | | | ||| || || |||| ||||||||| || ||| Sbjct 127318 GTCCAGACCGCCGTCCGCCTCGTGCTTCCCGGTGAGCTCGCCAAGCACGCCGTTTCGGAG 127259 Query 725136 GGCACCA 725142 ||||||| Sbjct 127258 GGCACCA 127252 >seq108 Length=54964 Score = 140 bits (154), Expect = 5e-27 Identities = 278/402 (69%), Gaps = 15/402 (4%) Strand=Plus/Plus Query 165531 GAGGTCGACGACGCCCTTTGTGTGGTCATGCGCGCCTATGTCGAAAAGCCGCGCACGACC 165590 ||| ||| ||| | | ||| ||| |||||||| | || | |||||||| || || ||| Sbjct 3099 GAGTTCGCCGAGGACATTTTTGTCGTCATGCGTGTGTACTTTGAAAAGCCCCGTACCACC 3158 Query 165591 GTTGGATGGAAGGGCCTGGCCAGTGACCCCGATCTTGATGGCTCGTGCCGCCTGGCTGAT 165650 || || ||||||||||| | || || || || ||||| | | | | | Sbjct 3159 GTCGGCTGGAAGGGCCTCATTAACGATCCGGACCTCAATGGCACCTTTAACATCAACAAG 3218 Query 165651 GGCCTTGATACATCGCGCCGCCTGCTGCGTGATCTCGTCGTCGACG---TCGACCAACCC 165707 ||||| |||||| ||| | ||| | | |||| | || || ||| || ||| Sbjct 3219 GGCCTCCG--CATCGC-CCGTCAGCTCCTT---CTCGACATCAACACCCTCGGCCTCCCC 3272 Query 165708 GTGGCCGTCGAGTTTCTC-AGTCC-TCTGGTGGCCCCCTATTTGGCAGACCTGGTCACGT 165765 |||| | |||||||||| | ||| ||| | || || | | ||||| |||| | Sbjct 3273 GTGGGCACCGAGTTTCTCGACTCCATCTCGCCGCAGTTTACCT--CTGACCTCATCACCT 3330 Query 165766 GGGGCGCCGTCGGTGCGCGCACCACCGAGAGCCAGGTGCACCGCGAGATGGCGTCGGCGC 165825 |||||||| |||| ||||||||||||||||| ||| | ||||||||| | || || | | Sbjct 3331 GGGGCGCCATCGGGGCGCGCACCACCGAGAGTCAGATTCACCGCGAGCTCGCCTCCGGCC 3390 Query 165826 TGCCGCTGCCC-ATTGGCTTCAAAAACAGCACCGACGGCAGCGTGGCGACGGCCCTCGAT 165884 | || ||||| ||||||||||||||| |||| | ||||||||| || ||| |||| Sbjct 3391 TTTCG-TGCCCGATTGGCTTCAAAAACGGCACTGGTGGCAGCGTGCAGATGGCTGTCGAC 3449 Query 165885 GCCGTGCGCACTGCCGCCCAGCCACACACCTTTCTCTGGGTC 165926 ||| | || |||| || | || |||| || ||| ||||| Sbjct 3450 GCCATTAGCTCTGCGTCCAACCCGCACAGTTTCCTCGGGGTC 3491 >seq7 Length=852142 Score = 132 bits (146), Expect = 7e-25 Identities = 181/247 (73%), Gaps = 12/247 (5%) Strand=Plus/Minus Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958 |||||||| | || |||||||||||||||||||||||||| |||| | ||| Sbjct 811172 TACTCGTCGTACATTTACAAGGTGCTCAAGCAGGTGCACCCGGACACCGGT-----ATC- 811119 Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018 ||||| ||||||||| ||||||||||| || ||||||| | |||| ||| ||| | Sbjct 811118 TCCAAGAAGTCCATGAGCATCATGAACTCCTTCATCAACGATGTCTTCGAGCGCCTCGCC 811059 Query 725019 ACCGAGGCCGG-TCGCCTGGC--GCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAG 725075 |||||||| || || ||| | | | ||||| || || | || |||||||| Sbjct 811058 ACCGAGGCTGGCAAGCTCGGCAAGTACAACGACAAG-GCTACCC--TCTCTTCGCGCGAG 811002 Query 725076 ATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAG 725135 ||||||||||||| ||||| | | | || || || |||| ||||||||| || ||| Sbjct 811001 GTCCAGACCGCCGTCCGCCTTGTGCTTCCTGGTGAGCTCGCCAAGCACGCCGTGTCGGAG 810942 Query 725136 GGCACCA 725142 ||||||| Sbjct 810941 GGCACCA 810935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177780142508164