Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945. 1_202015-01-15] 322 sequences; 39,089,698 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq7 131 1e-25 seq49 111 1e-19 seq53 98.7 8e-16 seq61 84.2 2e-11 seq1 82.4 6e-11 >seq7 Length=852142 Score = 131 bits (144), Expect = 1e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 |||| || | |||||| || || || || ||||||||||| | |||| | || ||| Sbjct 77925 ACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTAAGTGTGCGGCCATCCTCG 77866 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| || || ||| ||||||||||||| ||||| || || | |||||| || || | Sbjct 77865 AGCTGCTTGCCAGCGAAAATGAGACGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTGG 77806 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| | || | | | || | ||||| | || || || || ||||| |||| ||| Sbjct 77805 ATCTTCTGCTTGACGTTCTCAATCGTGTCCGAGGGCTCGACATCGAGAGTAATAGTCTTG 77746 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || |||||||| || |||||||| |||||| Sbjct 77745 CCAGTCAGAGTCTTGACAAAGATCTGCATA 77716 Score = 123 bits (136), Expect = 2e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| || || || || ||||||||||| | |||| |||| |||||||| || || Sbjct 77457 GTAGACTCCTTCTGGATGTTGTAGTCGCTAAGCGTGCGGCCGTCCTCGAGCTGCTTGCCA 77398 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||||||||| ||||| || || | |||||| || || ||||| | || Sbjct 77397 GCGAAGATGAGACGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTGAATCTTCTGCTTG 77338 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | || || || || ||||| |||| ||||| |||||||| Sbjct 77337 ACGTTCTCAATGGTGTCCGAGGGCTCGACATCGAGAGTAATAGTCTTGCCAGTCAGAGTC 77278 Query 27231 TTCACAAAGATTTGCATA 27248 || |||||||| |||||| Sbjct 77277 TTGACAAAGATCTGCATA 77260 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| || || || || ||||||||||| | |||| |||| |||||||| || || Sbjct 77001 GTAGACTCCTTCTGGATGTTGTAGTCGCTAAGCGTGCGGCCGTCCTCGAGCTGCTTGCCA 76942 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||||||||| ||||| || || | ||||| ||||| |||||| | || Sbjct 76941 GCGAAGATGAGACGCTGCTGATCAGGGGGAATGCCCTCCTTATCCTGGATCTTCTGCTTG 76882 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | |||||| | | || || || || || || | ||||||||| || || Sbjct 76881 ACGTTCTCAATAGTGTCCGAAGGCTCGACATCAAGGGTGATGGTTTTGCCCGTGAGGGTC 76822 Query 27231 TTCACAAAGATTTGCAT 27247 || || ||||| ||||| Sbjct 76821 TTAACGAAGATCTGCAT 76805 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| || || || || ||||||||||| | |||| |||| |||||||| || || Sbjct 77229 GTAGACTCCTTCTGGATGTTGTAGTCGCTAAGCGTGCGGCCGTCCTCGAGCTGCTTGCCA 77170 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||||||||| ||||| || || | |||||| ||||| ||||| | || Sbjct 77169 GCGAAGATGAGACGCTGCTGATCAGGGGGGATACCCTCCTTATCCTGAATCTTCTGCTTG 77110 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | | || || || || || || | ||||| || ||||| Sbjct 77109 ACGTTCTCAATGGTGTCCGAAGGCTCGACATCAAGGGTGATGGTCTTGCCGGTGAGAGTC 77050 Query 27231 TTCACAAAGATTTGCATA 27248 || ||||| || |||||| Sbjct 77049 TTTACAAAAATCTGCATA 77032 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||||||||| | |||| |||| |||||||| || || Sbjct 77685 GTGGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCT 77626 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||||||||| ||||| || || | |||||| ||||| |||||| | || Sbjct 77625 GCGAAGATGAGACGCTGCTGATCAGGGGGAATACCCTCCTTATCCTGGATCTTCTGCTTG 77566 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | | || || || || || || | |||||||| || || Sbjct 77565 ACGTTCTCAATGGTGTCCGAAGGCTCGACATCAAGGGTGATGGTCTTGCCCGTGAGGGTC 77506 Query 27231 TTCACAAAGATTTGCATA 27248 || || ||||| |||||| Sbjct 77505 TTGACGAAGATCTGCATA 77488 >seq49 Length=285000 Score = 111 bits (122), Expect = 1e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| || || || || ||||||||||| | |||| |||| |||||||| || ||| Sbjct 148312 GTAGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCG 148253 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||||||||| ||||| || || | |||||| || || |||||| | ||| Sbjct 148252 GCGAAGATGAGACGCTGCTGATCGGGGGGGATACCCTCCTTGTCCTGGATCTTCTGCTTC 148193 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | || || || || || || || | |||||||| || || Sbjct 148192 ACGTTCTCGATGGTGTCCGAGGGCTCGACATCGAGGGTGATGGTCTTGCCCGTAAGGGTC 148133 Query 27231 TTCACAAAGATTTG 27244 || || ||||| || Sbjct 148132 TTGACGAAGATCTG 148119 >seq53 Length=241909 Score = 98.7 bits (108), Expect = 8e-16 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||||||||| | |||| |||| |||||||| || ||| Sbjct 193413 GTGGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCG 193354 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||| ||||| ||||| || || | |||||| || || ||||| | ||| Sbjct 193353 GCGAAGATGAGGCGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTGAATCTTCTGCTTC 193294 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | || || || || || || || | || ||||| || || Sbjct 193293 ACGTTCTCGATGGTGTCCGAGGGCTCGACATCGAGGGTGATGGTCTTACCCGTGAGGGTC 193234 Query 27231 TTCACAAAGATTTG 27244 || |||||||| || Sbjct 193233 TTTACAAAGATCTG 193220 >seq61 Length=193651 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/210 (69%), Gaps = 3/210 (1%) Strand=Plus/Minus Query 131752 GTCCGCATGCCAGGGTTCCAAATACACTGCCATTGCGCCTTTGCGCTT---ACCGCCTTG 131808 ||| ||||||||||| || | |||| || | | ||| |||||||| ||||| || Sbjct 58144 GTCGGCATGCCAGGGCTCAAGGTACATGGCAAAGGAGCCCTTGCGCTTGCCGCCGCCCTG 58085 Query 131809 ATTAACATGACGAACCATGTTGTTGTATACGCGCAACATGGGCTCCAAACCGTTGGCGTT 131868 | || | || || ||| |||| | ||||||| ||||||| | | ||||||| || Sbjct 58084 GTCCACGTAGCGGGCCGTGTCGTTGAAGACGCGCAGCATGGGCACGATGCCGTTGGACTT 58025 Query 131869 TCCATTGGTGCTCTTAATGTAGCTGCCATTGGCTCTGATTTTGTGAACGTTGAGTCCAAT 131928 || ||||||| | |||||| || || | || ||||| | ||||| ||||| Sbjct 58024 GCCGTTGGTGCCGGCCACGTAGCTTCCCGAAGCGCGAATGTTGTGGATGTTGACACCAAT 57965 Query 131929 ACCTCCGCCGTATTTAGAGATTAGTGCGCA 131958 || ||| |||| || ||||| | ||||| Sbjct 57964 GCCGCCGGCGTACTTGGAGATGCGCGCGCA 57935 >seq1 Length=1674554 Score = 82.4 bits (90), Expect = 6e-11 Identities = 116/163 (71%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||||||||||| |||| |||| || ||||| || ||| Sbjct 772334 GTGGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCG 772275 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | || || ||||| ||||| || || | ||||||||| || |||||| | ||| Sbjct 772274 GCGAAGATAAGGCGCTGCTGATCAGGGGGGATACCCTCTTTGTCCTGGATCTTCTGCTTC 772215 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAG 27213 | | || | ||||| | || || || || || || |||| Sbjct 772214 ACATTCTCGATGGTGTCCGAGGGCTCGACATCGAGGGTGATAG 772172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424932732398064