Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945.
1_202015-01-15] 322 sequences; 39,089,698 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq7 131 1e-25
seq49 111 1e-19
seq53 98.7 8e-16
seq61 84.2 2e-11
seq1 82.4 6e-11
>seq7
Length=852142
Score = 131 bits (144), Expect = 1e-25
Identities = 155/210 (74%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098
|||| || | |||||| || || || || ||||||||||| | |||| | || |||
Sbjct 77925 ACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTAAGTGTGCGGCCATCCTCG 77866
Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158
||||| || || ||| ||||||||||||| ||||| || || | |||||| || || |
Sbjct 77865 AGCTGCTTGCCAGCGAAAATGAGACGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTGG 77806
Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218
||||| | || | | | || | ||||| | || || || || ||||| |||| |||
Sbjct 77805 ATCTTCTGCTTGACGTTCTCAATCGTGTCCGAGGGCTCGACATCGAGAGTAATAGTCTTG 77746
Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248
|| |||||||| || |||||||| ||||||
Sbjct 77745 CCAGTCAGAGTCTTGACAAAGATCTGCATA 77716
Score = 123 bits (136), Expect = 2e-23
Identities = 146/198 (74%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110
||||| || || || || ||||||||||| | |||| |||| |||||||| || ||
Sbjct 77457 GTAGACTCCTTCTGGATGTTGTAGTCGCTAAGCGTGCGGCCGTCCTCGAGCTGCTTGCCA 77398
Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170
||| | ||||||||||| ||||| || || | |||||| || || ||||| | ||
Sbjct 77397 GCGAAGATGAGACGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTGAATCTTCTGCTTG 77338
Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230
| | | || | ||||| | || || || || ||||| |||| ||||| ||||||||
Sbjct 77337 ACGTTCTCAATGGTGTCCGAGGGCTCGACATCGAGAGTAATAGTCTTGCCAGTCAGAGTC 77278
Query 27231 TTCACAAAGATTTGCATA 27248
|| |||||||| ||||||
Sbjct 77277 TTGACAAAGATCTGCATA 77260
Score = 113 bits (124), Expect = 4e-20
Identities = 143/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110
||||| || || || || ||||||||||| | |||| |||| |||||||| || ||
Sbjct 77001 GTAGACTCCTTCTGGATGTTGTAGTCGCTAAGCGTGCGGCCGTCCTCGAGCTGCTTGCCA 76942
Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170
||| | ||||||||||| ||||| || || | ||||| ||||| |||||| | ||
Sbjct 76941 GCGAAGATGAGACGCTGCTGATCAGGGGGAATGCCCTCCTTATCCTGGATCTTCTGCTTG 76882
Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230
| | | || | |||||| | | || || || || || || | ||||||||| || ||
Sbjct 76881 ACGTTCTCAATAGTGTCCGAAGGCTCGACATCAAGGGTGATGGTTTTGCCCGTGAGGGTC 76822
Query 27231 TTCACAAAGATTTGCAT 27247
|| || ||||| |||||
Sbjct 76821 TTAACGAAGATCTGCAT 76805
Score = 105 bits (116), Expect = 6e-18
Identities = 142/198 (72%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110
||||| || || || || ||||||||||| | |||| |||| |||||||| || ||
Sbjct 77229 GTAGACTCCTTCTGGATGTTGTAGTCGCTAAGCGTGCGGCCGTCCTCGAGCTGCTTGCCA 77170
Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170
||| | ||||||||||| ||||| || || | |||||| ||||| ||||| | ||
Sbjct 77169 GCGAAGATGAGACGCTGCTGATCAGGGGGGATACCCTCCTTATCCTGAATCTTCTGCTTG 77110
Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230
| | | || | ||||| | | || || || || || || | ||||| || |||||
Sbjct 77109 ACGTTCTCAATGGTGTCCGAAGGCTCGACATCAAGGGTGATGGTCTTGCCGGTGAGAGTC 77050
Query 27231 TTCACAAAGATTTGCATA 27248
|| ||||| || ||||||
Sbjct 77049 TTTACAAAAATCTGCATA 77032
Score = 105 bits (116), Expect = 6e-18
Identities = 142/198 (72%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110
|| || || || || || ||||||||||| | |||| |||| |||||||| || ||
Sbjct 77685 GTGGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCT 77626
Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170
||| | ||||||||||| ||||| || || | |||||| ||||| |||||| | ||
Sbjct 77625 GCGAAGATGAGACGCTGCTGATCAGGGGGAATACCCTCCTTATCCTGGATCTTCTGCTTG 77566
Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230
| | | || | ||||| | | || || || || || || | |||||||| || ||
Sbjct 77565 ACGTTCTCAATGGTGTCCGAAGGCTCGACATCAAGGGTGATGGTCTTGCCCGTGAGGGTC 77506
Query 27231 TTCACAAAGATTTGCATA 27248
|| || ||||| ||||||
Sbjct 77505 TTGACGAAGATCTGCATA 77488
>seq49
Length=285000
Score = 111 bits (122), Expect = 1e-19
Identities = 141/194 (73%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110
||||| || || || || ||||||||||| | |||| |||| |||||||| || |||
Sbjct 148312 GTAGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCG 148253
Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170
||| | ||||||||||| ||||| || || | |||||| || || |||||| | |||
Sbjct 148252 GCGAAGATGAGACGCTGCTGATCGGGGGGGATACCCTCCTTGTCCTGGATCTTCTGCTTC 148193
Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230
| | | || | ||||| | || || || || || || || | |||||||| || ||
Sbjct 148192 ACGTTCTCGATGGTGTCCGAGGGCTCGACATCGAGGGTGATGGTCTTGCCCGTAAGGGTC 148133
Query 27231 TTCACAAAGATTTG 27244
|| || ||||| ||
Sbjct 148132 TTGACGAAGATCTG 148119
>seq53
Length=241909
Score = 98.7 bits (108), Expect = 8e-16
Identities = 138/194 (71%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110
|| || || || || || ||||||||||| | |||| |||| |||||||| || |||
Sbjct 193413 GTGGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCG 193354
Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170
||| | ||||| ||||| ||||| || || | |||||| || || ||||| | |||
Sbjct 193353 GCGAAGATGAGGCGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTGAATCTTCTGCTTC 193294
Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230
| | | || | ||||| | || || || || || || || | || ||||| || ||
Sbjct 193293 ACGTTCTCGATGGTGTCCGAGGGCTCGACATCGAGGGTGATGGTCTTACCCGTGAGGGTC 193234
Query 27231 TTCACAAAGATTTG 27244
|| |||||||| ||
Sbjct 193233 TTTACAAAGATCTG 193220
>seq61
Length=193651
Score = 84.2 bits (92), Expect = 2e-11
Identities = 145/210 (69%), Gaps = 3/210 (1%)
Strand=Plus/Minus
Query 131752 GTCCGCATGCCAGGGTTCCAAATACACTGCCATTGCGCCTTTGCGCTT---ACCGCCTTG 131808
||| ||||||||||| || | |||| || | | ||| |||||||| ||||| ||
Sbjct 58144 GTCGGCATGCCAGGGCTCAAGGTACATGGCAAAGGAGCCCTTGCGCTTGCCGCCGCCCTG 58085
Query 131809 ATTAACATGACGAACCATGTTGTTGTATACGCGCAACATGGGCTCCAAACCGTTGGCGTT 131868
| || | || || ||| |||| | ||||||| ||||||| | | ||||||| ||
Sbjct 58084 GTCCACGTAGCGGGCCGTGTCGTTGAAGACGCGCAGCATGGGCACGATGCCGTTGGACTT 58025
Query 131869 TCCATTGGTGCTCTTAATGTAGCTGCCATTGGCTCTGATTTTGTGAACGTTGAGTCCAAT 131928
|| ||||||| | |||||| || || | || ||||| | ||||| |||||
Sbjct 58024 GCCGTTGGTGCCGGCCACGTAGCTTCCCGAAGCGCGAATGTTGTGGATGTTGACACCAAT 57965
Query 131929 ACCTCCGCCGTATTTAGAGATTAGTGCGCA 131958
|| ||| |||| || ||||| | |||||
Sbjct 57964 GCCGCCGGCGTACTTGGAGATGCGCGCGCA 57935
>seq1
Length=1674554
Score = 82.4 bits (90), Expect = 6e-11
Identities = 116/163 (71%), Gaps = 0/163 (0%)
Strand=Plus/Minus
Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110
|| || || || || || ||||||||||||| |||| |||| || ||||| || |||
Sbjct 772334 GTGGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCG 772275
Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170
||| | || || ||||| ||||| || || | ||||||||| || |||||| | |||
Sbjct 772274 GCGAAGATAAGGCGCTGCTGATCAGGGGGGATACCCTCTTTGTCCTGGATCTTCTGCTTC 772215
Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAG 27213
| | || | ||||| | || || || || || || ||||
Sbjct 772214 ACATTCTCGATGGTGTCCGAGGGCTCGACATCGAGGGTGATAG 772172
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424932732398064
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |