Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945. 1_202015-01-15] 322 sequences; 39,089,698 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq61 199 5e-46 seq18 100 4e-16 seq1 84.2 3e-11 >seq61 Length=193651 Score = 199 bits (220), Expect = 5e-46 Identities = 677/1043 (65%), Gaps = 25/1043 (2%) Strand=Plus/Minus Query 111056 GCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGA-CTTTCGCGCAGT 111114 ||||| || || ||||| | || | ||| | ||| ||||| || | ||| || Sbjct 58752 GCGAGGCCCTGTACACCAATGCCGACAGGGCGGTGGCGCATGTTGCTGCGCTCG-GCCTC 58694 Query 111115 CTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGT 111174 ||| ||||| ||||| || | |||||| || |||||||| || ||||| |||| || || Sbjct 58693 CTCGACGGGGTAAAAGTTGCCGTCAATAACGCGGTTTAGGTTCTTGGTCACAACTTTGGT 58634 Query 111175 GATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCA---TTGACATACTTTGG 111231 || |||| || | | | ||| | |||| |||||| |||||| |||| | Sbjct 58633 GACATCATAGAGGCCCTGAAAGTCATAGGTGCC---CTCTTCGATGTTGACAAACTTGCG 58577 Query 111232 AAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAAT 111291 |||| ||| || |||| ||||||||||| ||||||| | |||||||| | || Sbjct 58576 AAGGTTGATCGAGGCCAGGTTGCAAACAGCGACCTCATCCGGGGCAGTGTACTCGATGAT 58517 Query 111292 TTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTT 111351 || || || | ||| || ||| || | || | ||||| ||||| ||| ||| Sbjct 58516 CTCCGTGCAGAGGTTCGAGGACTTGATGATGCCAAGGTTCTTCTGGTTCGACTTGCGGTT 58457 Query 111352 GCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGC 111411 ||| || |||||| | ||||| ||||| |||||||| |||| | ||||||| Sbjct 58456 GCATGCGTCCTTGAAAAGCATAAAGGGCACACCCGTCTCGATCTGGCAGCTGAGAATCTG 58397 Query 111412 CTTCCAAACATCGGCGGCTGGTACAATGGCGTTGG--CCCGTCCCTCCGCCTCGTACTTT 111469 | ||| | || ||| | || | | | | | || |||||| |||||| Sbjct 58396 GTACCAGAGGTCCTGGGC--GCGCATCGTCTTGCGACCGCGACCCTCCTTCTCGTAGCGC 58339 Query 111470 GTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGA 111529 |||||| | | ||||| || || |||| ||||| || |||| || || Sbjct 58338 TCGTAGAGCTCCTTGAACTCGTCGCCATAGACGTCCGAGAGCCCCTTGGCCTCGTTCGGG 58279 Query 111530 CAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCAC 111589 || || || | ||| | |||| || |||| |||||||||||| || | ||| Sbjct 58278 CAAAAGAGCGTCCAGGTGCTGTTCGCCTCGACGCGCTCCATGAAAAGGTCAGGGACCCAG 58219 Query 111590 AGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCA 111649 || | ||||||| || | || ||| || | ||| ||||| || | |||| Sbjct 58218 AGCGCGTAAAAGAGGTCGCGCGCGCGGTTCTCCTCCTTACCGTGGTTCTTGCGGAGCTCA 58159 Query 111650 AGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG- 111708 | || || || || || ||||| |||||||| || | || | || ||||| || Sbjct 58158 ATAAAGTCTTCGACGTCGGCATGCCAGGGCTCAAGGTACATGGCAAAGGAGCCCTTGCGC 58099 Query 111709 --ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATA 111766 | || | || | || ||||| || ||| |||| || ||||| ||||| || | Sbjct 58098 TTGCCGCCGCCCTGGTCCACGTAGCGGGCCGTGTCGTTGAAGACGCGCAGCATGGGCACG 58039 Query 111767 ATACCATCTGATTGACCATTTGTCCCCCGAATACG-AGATT-TATTGGCTCTCACATCAT 111824 || || | || | || || || ||| ||| || || || | | | | Sbjct 58038 ATGCCGTTGGACTTGCCGTTGGT--GCCGGCCACGTAGCTTCCCGAAGCGCGAATGTTGT 57981 Query 111825 GGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTC 111884 |||||| | ||||| || || || |||| ||||| |||| ||| | || || Sbjct 57980 GGATGTTGACACCAATGCCGCCGGCGTACTTGGAGATGCGCGCGCACGTCTCGAGCGTCT 57921 Query 111885 CATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCG 111944 |||| || | || ||||| ||||| || | |||||||| || |||||||||| Sbjct 57920 GGAAGATGCCCTCAATCGAGTCGTCCTTCATGTGCACGAGGAAGCAGCTCGACATCTGCG 57861 Query 111945 GTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTG---AATGAACATACCTTGGG 112001 | | || ||||| || |||||||| || || || ||||| || |||| | ||| | Sbjct 57860 GGCGCGGGGTACCGGCGTTGAAGAGCGTGGGCGTGGCGTGCGTAAAGAACTT---TTGCG 57804 Query 112002 ACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGA 112061 ||||| ||| ||| ||||| | | || |||||||||||| |||||| || | | || Sbjct 57803 ACATCATGTTGTAGGTCTCAATGGCACGGTCAATGTCTTCCTTGTGGATACCCACAGAGA 57744 Query 112062 CCCGCATGAACATGTACTGTGGG 112084 | ||||||| ||| | ||| ||| Sbjct 57743 CACGCATGAGCATCTGCTGGGGG 57721 >seq18 Length=676545 Score = 100 bits (110), Expect = 4e-16 Identities = 332/507 (65%), Gaps = 21/507 (4%) Strand=Plus/Plus Query 11429 GGAAGACCCACTTGGATCTTGCGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGG 11488 |||||| | || | ||| | ||||| || ||||| || || |||| || || || Sbjct 375721 GGAAGATCGACGTTGATAGTCCGATCGAAGCGACCGGGACGGAGGATTGCCGGGTCGAGA 375780 Query 11489 ATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTC---AAAGCCA 11545 || || || || || ||| | || | || |||| ||| ||| ||| ||||||| Sbjct 375781 ATGTCAACACGGTTGGTGCCGGCCAAGACGACAACGCC---CTCCTTGGAGGTAAAGCCA 375837 Query 11546 TCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATA--- 11602 ||||||||| ||||| ||||| | || | || | |||||| || || | || Sbjct 375838 TCCATCTCGACGAGTAGCTGATTCAGAGTGTTCTCACGCTCATCGTT-GCCGCCACTGAA 375896 Query 11603 -CCACCAGCACTGCGTTGCTTGCCC-ACCGCATCAATCTCATCAATGAAGACAATACATG 11660 ||||| | || || || | || ||||| |||||||| || |||||||| || | Sbjct 375897 GCCACCCTTTCCACGG-GCGCGCGCGACGGCATCGATCTCATCGATAAAGACAATGCACG 375955 Query 11661 GTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAA 11720 | || | ||| || ||||||||||||| || | | ||| ||||| || | Sbjct 375956 GGGCGTTCTTGCGCGCCTGGCCAAAGAGATCGCGCACGCGCGACGGACCAACACCGACGA 376015 Query 11721 ACATCTCCACAAAGTTTGCGGCAGAGCACTGG--ATGAATGGGACATTTGATTCACCCGC 11778 ||||||| | |||| | |||| | ||| | ||| || ||| | | || || || Sbjct 376016 ACATCTCGATGAAGTCACTGCCAGA--AATGGAAAAGAAGGGCACACTGGCCTCGCCGGC 376073 Query 11779 GATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCG 11838 | || ||| | ||| ||||| |||||||| || || || || | ||| || Sbjct 376074 AGTAGCCTTGGCCAAGAGCGTCTTGCCCGTACCGGGTGGGCCTGCCAGCAAGGCACCCTT 376133 Query 11839 GGGGATCTTGGCACCA--CTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATC 11896 |||||||||||| ||| |||| || | | || || | |||||| || || |||| | Sbjct 376134 GGGGATCTTGGCCCCAAGCTTCGTAA--AGCGCTTAGGGTCCTTGAGGAACTCGACAAAC 376191 Query 11897 TCTTCAAGTTCATCTTTGGCCGCGTCA 11923 || | ||| | |||||| ||||| Sbjct 376192 TCCATGATTTCCACCTTGGCCTCGTCA 376218 >seq1 Length=1674554 Score = 84.2 bits (92), Expect = 3e-11 Identities = 105/142 (74%), Gaps = 4/142 (3%) Strand=Plus/Minus Query 183577 CATCCTTGATCACAATGGAAAACTCC--GATGAGTAGATGTTGGTCAACTTGGCACCATA 183634 |||| ||| || | | ||| |||||| | ||| ||||||||| | ||||||||| || Sbjct 1190901 CATCATTGGTCTCCACGGAGAACTCCTTGCTGA--AGATGTTGGCAAGCTTGGCACCGTA 1190844 Query 183635 GCCGTTGCGACCTCCCACAATTCTCTTCTTTGTGTCATCATAATTTGTACTCGTAAGAAG 183694 ||||||||| || || |||| | ||| | ||||| ||| ||||| || ||| || || Sbjct 1190843 GCCGTTGCGTCCACCGACAACACGCTTTTGGGTGTCCTCAAAATTTTCACCCGTCAGGAG 1190784 Query 183695 ATGCCCAAATGTAAGTTCGGGA 183716 || ||||| ||||||||| Sbjct 1190783 GTGGCCAAAGACGAGTTCGGGA 1190762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628029472171200