Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945.
1_202015-01-15] 322 sequences; 39,089,698 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq61 289 4e-73
seq30 105 8e-18
seq1 84.2 3e-11
>seq61
Length=193651
Score = 289 bits (320), Expect = 4e-73
Identities = 702/1046 (67%), Gaps = 33/1046 (3%)
Strand=Plus/Minus
Query 118530 GCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTC 118589
||||| || || ||||| | ||| | ||||| || | ||| || | || ||| |
Sbjct 58752 GCGAGGCCCTGTACACCAATGCCGACAGGGCGGTGGCGCATGTTGC---TGCGCTCGGCC 58696
Query 118590 TCC---ACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTT 118646
||| ||||| ||||| || | || ||||| | ||||| || ||||| ||||| ||
Sbjct 58695 TCCTCGACGGGGTAAAAGTTGCCGTCAATAACGCGGTTTAGGTTCTTGGTCACAACTTTG 58636
Query 118647 GTGATTTCAT-GAAGCTTTTCGTAA-TCAAAACTGCGAGTCTCTTCA---TTGACATACT 118701
|||| |||| || || | | || ||| | ||| |||||| |||||| |||
Sbjct 58635 GTGACATCATAGAGGCCCT--GAAAGTCATAGGTGCC---CTCTTCGATGTTGACAAACT 58581
Query 118702 TAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTA 118761
| ||||| ||| || ||||| || || |||| | ||||||| |||||||||| |
Sbjct 58580 TGCGAAGGTTGATCGAGGCCAGGTTGCAAACAGCGACCTCATCCGGGGCAGTGTACTCGA 58521
Query 118762 TAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTG 118821
| || |||||||| | ||| || ||| ||| |||| | |||||| || || |||||
Sbjct 58520 TGATCTCCGTGCAGAGGTTCGAGGACTTGATGATGCCAAGGTTCTTCTGGTTCGACTTGC 58461
Query 118822 TGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAA 118881
||| || || |||||| ||||||| | ||| |||||||| | ||| | ||||||
Sbjct 58460 GGTTGCATGCGTCCTTGAAAAGCATAAAGGGCACACCCGTCTCGATCTGGCAGCTGAGAA 58401
Query 118882 TAGCCTTCCAGACATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACT 118941
| | ||||| || || ||| || | | || ||||| | ||||||
Sbjct 58400 TCTGGTACCAGAGGTCCTGGGCGCGCATCGTCTTGCGACCGCGACCCTCCTTCTCGTAGC 58341
Query 118942 TTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTG 119001
|||||| | | ||||| || || | | || |||||||| |||| | |
Sbjct 58340 GCTCGTAGAGCTCCTTGAACTCGTCGCCATAGACGTCCGAGAGCCCCTTGGCCTCGTTCG 58281
Query 119002 GGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCC 119061
|||| ||||| | ||| | | |||| || |||| |||||| ||||| |||| ||
Sbjct 58280 GGCAAAAGAGCGTCCAGGTGCTGTTCGCCTCGACGCGCTCCATGAAAAGGTCAGGGACCC 58221
Query 119062 AGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCT--TCATCCCCCTGATTGAGACGCAA 119119
||||||| | ||||| || || ||| | |||| || | || || || || |
Sbjct 58220 AGAGCGCGTAAAAGAGGTCGCGC--GCGCGGTTCTCCTCCTTACCGTGGTTCTTGCGGAG 58163
Query 119120 CTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTT 119179
||| | |||||| || || || ||||| || || ||||||| || | || |||||
Sbjct 58162 CTCAATAAAGTCTTCGACGTCGGCATGCCAGGGCTCAAGGTACATGGCAAAGGAGCCCTT 58103
Query 119180 ACGA---CGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGG 119236
|| | || |||||| || || | || ||| |||| || || || ||||| ||
Sbjct 58102 GCGCTTGCCGCCGCCCTGGTCCACGTAGCGGGCCGTGTCGTTGAAGACGCGCAGCATGGG 58043
Query 119237 AATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTG--GCTCTGACA 119294
| ||| || | ||| | ||| || || || | ||| ||| | || | |
Sbjct 58042 CACGATGCCGTTGGACTTGCCGTTGGTGCC--GGCCACGTAGCTTCCCGAAGCGCGAATG 57985
Query 119295 TCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCAC-TC-CGTGA 119352
| |||||||| | |||||| || || || |||| ||||| |||||||| || || |
Sbjct 57984 TTGTGGATGTTGACACCAATGCCGCCGGCGTACTTGGAGATGCGCGCGCACGTCTCGAGC 57925
Query 119353 GACTGCCGTAGATCCCATCGATCGAGTCACCCTT-ATTTGCGATGAGGAAGCAGCTCGAC 119411
| ||| | |||| || || |||||||| |||| || ||| | ||||||||||||||||
Sbjct 57924 GTCTG--GAAGATGCCCTCAATCGAGTCGTCCTTCATGTGC-ACGAGGAAGCAGCTCGAC 57868
Query 119412 ATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCT 119471
|| || || | || ||||| ||||||||||| || || || ||||| | || | |
Sbjct 57867 ATCTGCGGGCGCGGGGTACCGGCGTTGAAGAGCGTGGGCGTGGCGTGCGTAAAGAACTTT 57808
Query 119472 TGGGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATC 119531
|| |||||| ||| ||||||||| | | | | |||||||||| ||| ||||| |
Sbjct 57807 TGCGACATCATGTTGTAGGTCTCAATGGCACGGTCAATGTCTTCCTTGTGGATACCCACA 57748
Query 119532 GAGACCCGCATAAACATGTATTGGGG 119557
||||| ||||| | ||| | |||||
Sbjct 57747 GAGACACGCATGAGCATCTGCTGGGG 57722
>seq30
Length=443502
Score = 105 bits (116), Expect = 8e-18
Identities = 121/163 (74%), Gaps = 0/163 (0%)
Strand=Plus/Plus
Query 130016 GCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 130075
||||| || ||| | |||||||| ||| |||||| || || || ||| || ||
Sbjct 288370 GCAAAGTCAGTGTGCATGCCCTCGTCGCGGCTGATGAGCTCGTTGGAAAAGGTGAGGCCC 288429
Query 130076 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 130135
|||||||| || |||||||| | ||| || ||||| || || |||||||| ||||||||
Sbjct 288430 GGCATGAGGCCGCGCTTCTTGAGCCAAAAGATCGCGCAGAAAGAGCCAGAAAAGAAGATG 288489
Query 130136 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGC 130178
|| ||||| || || ||| || ||||||||||||| ||
Sbjct 288490 CCTTCCACGGCGGCAAAGCCAACAAGGCGCTCAGCAAAGGTGC 288532
>seq1
Length=1674554
Score = 84.2 bits (92), Expect = 3e-11
Identities = 105/142 (74%), Gaps = 4/142 (3%)
Strand=Plus/Minus
Query 180836 CATCCTTGATCACGATGGAAAACTCC--GAAGAATAGATGTTCGTCAACTTGGCACCGTA 180893
|||| ||| || | | ||| |||||| | ||| |||||| | | ||||||||||||
Sbjct 1190901 CATCATTGGTCTCCACGGAGAACTCCTTGCTGAA--GATGTTGGCAAGCTTGGCACCGTA 1190844
Query 180894 GCCATTGCGTCCACCAACAATTCTCTTCTTGTTGTCATCGTAGTTTGTACTCGTGAGGAG 180953
||| ||||||||||| |||| | ||| | | |||| || | ||| || ||| |||||
Sbjct 1190843 GCCGTTGCGTCCACCGACAACACGCTTTTGGGTGTCCTCAAAATTTTCACCCGTCAGGAG 1190784
Query 180954 GTGACCAAAGGTAAGTTCTGGA 180975
||| |||||| ||||| |||
Sbjct 1190783 GTGGCCAAAGACGAGTTCGGGA 1190762
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618432710798320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |