Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945. 1_202015-01-15] 322 sequences; 39,089,698 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq61 289 4e-73 seq30 105 8e-18 seq1 84.2 3e-11 >seq61 Length=193651 Score = 289 bits (320), Expect = 4e-73 Identities = 702/1046 (67%), Gaps = 33/1046 (3%) Strand=Plus/Minus Query 118530 GCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTC 118589 ||||| || || ||||| | ||| | ||||| || | ||| || | || ||| | Sbjct 58752 GCGAGGCCCTGTACACCAATGCCGACAGGGCGGTGGCGCATGTTGC---TGCGCTCGGCC 58696 Query 118590 TCC---ACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTT 118646 ||| ||||| ||||| || | || ||||| | ||||| || ||||| ||||| || Sbjct 58695 TCCTCGACGGGGTAAAAGTTGCCGTCAATAACGCGGTTTAGGTTCTTGGTCACAACTTTG 58636 Query 118647 GTGATTTCAT-GAAGCTTTTCGTAA-TCAAAACTGCGAGTCTCTTCA---TTGACATACT 118701 |||| |||| || || | | || ||| | ||| |||||| |||||| ||| Sbjct 58635 GTGACATCATAGAGGCCCT--GAAAGTCATAGGTGCC---CTCTTCGATGTTGACAAACT 58581 Query 118702 TAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTA 118761 | ||||| ||| || ||||| || || |||| | ||||||| |||||||||| | Sbjct 58580 TGCGAAGGTTGATCGAGGCCAGGTTGCAAACAGCGACCTCATCCGGGGCAGTGTACTCGA 58521 Query 118762 TAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTG 118821 | || |||||||| | ||| || ||| ||| |||| | |||||| || || ||||| Sbjct 58520 TGATCTCCGTGCAGAGGTTCGAGGACTTGATGATGCCAAGGTTCTTCTGGTTCGACTTGC 58461 Query 118822 TGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAA 118881 ||| || || |||||| ||||||| | ||| |||||||| | ||| | |||||| Sbjct 58460 GGTTGCATGCGTCCTTGAAAAGCATAAAGGGCACACCCGTCTCGATCTGGCAGCTGAGAA 58401 Query 118882 TAGCCTTCCAGACATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACT 118941 | | ||||| || || ||| || | | || ||||| | |||||| Sbjct 58400 TCTGGTACCAGAGGTCCTGGGCGCGCATCGTCTTGCGACCGCGACCCTCCTTCTCGTAGC 58341 Query 118942 TTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTG 119001 |||||| | | ||||| || || | | || |||||||| |||| | | Sbjct 58340 GCTCGTAGAGCTCCTTGAACTCGTCGCCATAGACGTCCGAGAGCCCCTTGGCCTCGTTCG 58281 Query 119002 GGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCC 119061 |||| ||||| | ||| | | |||| || |||| |||||| ||||| |||| || Sbjct 58280 GGCAAAAGAGCGTCCAGGTGCTGTTCGCCTCGACGCGCTCCATGAAAAGGTCAGGGACCC 58221 Query 119062 AGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCT--TCATCCCCCTGATTGAGACGCAA 119119 ||||||| | ||||| || || ||| | |||| || | || || || || | Sbjct 58220 AGAGCGCGTAAAAGAGGTCGCGC--GCGCGGTTCTCCTCCTTACCGTGGTTCTTGCGGAG 58163 Query 119120 CTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTT 119179 ||| | |||||| || || || ||||| || || ||||||| || | || ||||| Sbjct 58162 CTCAATAAAGTCTTCGACGTCGGCATGCCAGGGCTCAAGGTACATGGCAAAGGAGCCCTT 58103 Query 119180 ACGA---CGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGG 119236 || | || |||||| || || | || ||| |||| || || || ||||| || Sbjct 58102 GCGCTTGCCGCCGCCCTGGTCCACGTAGCGGGCCGTGTCGTTGAAGACGCGCAGCATGGG 58043 Query 119237 AATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTG--GCTCTGACA 119294 | ||| || | ||| | ||| || || || | ||| ||| | || | | Sbjct 58042 CACGATGCCGTTGGACTTGCCGTTGGTGCC--GGCCACGTAGCTTCCCGAAGCGCGAATG 57985 Query 119295 TCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCAC-TC-CGTGA 119352 | |||||||| | |||||| || || || |||| ||||| |||||||| || || | Sbjct 57984 TTGTGGATGTTGACACCAATGCCGCCGGCGTACTTGGAGATGCGCGCGCACGTCTCGAGC 57925 Query 119353 GACTGCCGTAGATCCCATCGATCGAGTCACCCTT-ATTTGCGATGAGGAAGCAGCTCGAC 119411 | ||| | |||| || || |||||||| |||| || ||| | |||||||||||||||| Sbjct 57924 GTCTG--GAAGATGCCCTCAATCGAGTCGTCCTTCATGTGC-ACGAGGAAGCAGCTCGAC 57868 Query 119412 ATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCT 119471 || || || | || ||||| ||||||||||| || || || ||||| | || | | Sbjct 57867 ATCTGCGGGCGCGGGGTACCGGCGTTGAAGAGCGTGGGCGTGGCGTGCGTAAAGAACTTT 57808 Query 119472 TGGGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATC 119531 || |||||| ||| ||||||||| | | | | |||||||||| ||| ||||| | Sbjct 57807 TGCGACATCATGTTGTAGGTCTCAATGGCACGGTCAATGTCTTCCTTGTGGATACCCACA 57748 Query 119532 GAGACCCGCATAAACATGTATTGGGG 119557 ||||| ||||| | ||| | ||||| Sbjct 57747 GAGACACGCATGAGCATCTGCTGGGG 57722 >seq30 Length=443502 Score = 105 bits (116), Expect = 8e-18 Identities = 121/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 130016 GCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 130075 ||||| || ||| | |||||||| ||| |||||| || || || ||| || || Sbjct 288370 GCAAAGTCAGTGTGCATGCCCTCGTCGCGGCTGATGAGCTCGTTGGAAAAGGTGAGGCCC 288429 Query 130076 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 130135 |||||||| || |||||||| | ||| || ||||| || || |||||||| |||||||| Sbjct 288430 GGCATGAGGCCGCGCTTCTTGAGCCAAAAGATCGCGCAGAAAGAGCCAGAAAAGAAGATG 288489 Query 130136 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGC 130178 || ||||| || || ||| || ||||||||||||| || Sbjct 288490 CCTTCCACGGCGGCAAAGCCAACAAGGCGCTCAGCAAAGGTGC 288532 >seq1 Length=1674554 Score = 84.2 bits (92), Expect = 3e-11 Identities = 105/142 (74%), Gaps = 4/142 (3%) Strand=Plus/Minus Query 180836 CATCCTTGATCACGATGGAAAACTCC--GAAGAATAGATGTTCGTCAACTTGGCACCGTA 180893 |||| ||| || | | ||| |||||| | ||| |||||| | | |||||||||||| Sbjct 1190901 CATCATTGGTCTCCACGGAGAACTCCTTGCTGAA--GATGTTGGCAAGCTTGGCACCGTA 1190844 Query 180894 GCCATTGCGTCCACCAACAATTCTCTTCTTGTTGTCATCGTAGTTTGTACTCGTGAGGAG 180953 ||| ||||||||||| |||| | ||| | | |||| || | ||| || ||| ||||| Sbjct 1190843 GCCGTTGCGTCCACCGACAACACGCTTTTGGGTGTCCTCAAAATTTTCACCCGTCAGGAG 1190784 Query 180954 GTGACCAAAGGTAAGTTCTGGA 180975 ||| |||||| ||||| ||| Sbjct 1190783 GTGGCCAAAGACGAGTTCGGGA 1190762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618432710798320