Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945.
1_202015-01-15] 322 sequences; 39,089,698 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq61 190 2e-43
seq1 123 3e-23
seq30 118 1e-21
>seq61
Length=193651
Score = 190 bits (210), Expect = 2e-43
Identities = 640/986 (65%), Gaps = 29/986 (3%)
Strand=Plus/Plus
Query 104221 CCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGT 104280
||| ||| | ||| ||||||| || | | ||||| || |||||||||||| ||
Sbjct 57721 CCCCCAGCAGATGCTCATGCGTGTCTCTGTGGGTATCCACAAGGAAGACATTGACCGTGC 57780
Query 104281 CTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATT---CACGCAACACCAACCCT 104337
| | ||||| ||| ||| |||||| ||| | |||| || ||||| || || || ||
Sbjct 57781 CATTGAGACCTACAACATGATGTCGCAA---AAGTTCTTTACGCACGCCACGCCCACGCT 57837
Query 104338 CTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGA 104397
|||||| || ||||| || | || || ||||| || |||||||| | || |||||
Sbjct 57838 CTTCAACGCCGGTACCCCGCGCCCGCAGATGTCGAGCTGCTTCCTCGTGCACATGAAGGA 57897
Query 104398 GGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGC 104457
||||| || | || |||| || || | ||| |||| ||||| |||| ||
Sbjct 57898 CGACTCGATTGAGGGCATCTTCCAGACGCTCGAGACGTGCGCGCGCATCTCCAAGTACGC 57957
Query 104458 TGGGGGTATTGGGATGCACATCCATGATGTGAGAGC--CAATAAATCTCGTATTCGGGGG 104515
|| || ||||| | ||||||| | | | || | || ||| | ||
Sbjct 57958 CGGCGGCATTGGTGTCAACATCCACAACATTCGCGCTTCGGGAAGCTACGTGGCC--GGC 58015
Query 104516 ACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGC 104575
|| || || | || | || || | || ||||| ||||| || |||| ||| || |||
Sbjct 58016 ACCAACGGCAAGTCCAACGGCATCGTGCCCATGCTGCGCGTCTTCAACGACACGGCCCGC 58075
Query 104576 TATGTAAATCAAGCTG--GGC-GTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGG 104632
|| || | || | | ||| || ||||| || | || | || |||||||| |||
Sbjct 58076 TACGTGGACCAGGGCGGCGGCAAGCGCAAGGGCTCCTTTGCCATGTACCTTGAGCCCTGG 58135
Query 104633 CACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAG----GC 104688
|| || || || || || ||||| | || ||||| ||| | |||||| ||
Sbjct 58136 CATGCCGACGTCGAAGACTTTATTGAGCTCCGCAAGAACCACGGTAAGGAGGAGAACCGC 58195
Query 104689 GCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGA 104748
||| ||||| ||||| | ||| |||||| | || || || |||||| || | || ||
Sbjct 58196 GCG----CGCGACCTCTTTTACGCGCTCTGGGTCCCTGACCTTTTCATGGAGCGCGTCGA 58251
Query 104749 GGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGT 104808
|| || ||| ||| | |||||||| || || |||| || ||||| || | |
Sbjct 58252 GGCGAACAGCACCTGGACGCTCTTTTGCCCGAACGAGGCCAAGGGGCTCTCGGACGTCTA 58311
Query 104809 GGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGC--G 104866
|| || ||||| | | || ||| |||||| | || |||| ||| || |
Sbjct 58312 TGGCGACGAGTTCAAGGAGCTCTACGAGCGCTACGAGAAGGAGGGTC--GCGGTCGCAAG 58369
Query 104867 ACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACA 104926
||| ||| || || | ||| | ||||||| | || | |||||| |||
Sbjct 58370 ACGATGCGCGCCCAGGACCTCTGGTACCAGATTCTCAGCTGCCAGATCGAGACGGGTGTG 58429
Query 104927 CCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTG 104986
|| | ||||||| ||| ||||| || |||| ||| || || ||||| | || |
Sbjct 58430 CCCTTTATGCTTTTCAAGGACGCATGCAACCGCAAGTCGAACCAGAAGAACCTTGGCATC 58489
Query 104987 ATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCT 105046
|||||| || || ||||| || || ||| | || | || | | |||||| |||
Sbjct 58490 ATCAAGTCCTCGAACCTCTGCACGGAGATCATCGAGTACACTGCCCCGGATGAGGTCGCT 58549
Query 105047 GTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAG--ACAT 105104
|| || ||||| || || ||| || | ||||| ||| | || || | | || |
Sbjct 58550 GTTTGCAACCTGGCCTCGATCAACCTTCGCAAGTTTGTCAA--CATCGAAGAGGGCACCT 58607
Query 105105 TTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTA 105164
||| | | | ||| | || || || ||| ||| ||||| ||||||||| | ||||
Sbjct 58608 ATGACTTTCAGGGCCTCTATGATGTCACCAAAGTTGTGACCAAGAACCTAAACCGCGTTA 58667
Query 105165 TTGATAGAAATTTTTACCCCGTTGAG 105190
|||| | || ||||||||||| |||
Sbjct 58668 TTGACGGCAACTTTTACCCCGTCGAG 58693
>seq1
Length=1674554
Score = 123 bits (136), Expect = 3e-23
Identities = 278/409 (68%), Gaps = 8/409 (2%)
Strand=Plus/Minus
Query 169126 CTTGAGAAGACTTGGCCAGAAGTAGTGAATCATATTGAGAATGAGACCCTTGATGTGGGA 169185
||||||||| ||||| || | ||| || | || | | || ||||||||||| ||
Sbjct 1192169 CTTGAGAAGCGAGGGCCAAAAATGGTGGATAAAGTTCATGAGCAGTCCCTTGATGTGCGA 1192110
Query 169186 ACCGTCGTTATCGGCATCCGTCATGATCATGAGACGACCATACCGAAGCTCGGAAACATC 169245
||| || | ||| ||||||||||||||||||| | || ||||| || | ||
Sbjct 1192109 ACCATCATGATCCTGATCCGTCATGATCATGAGATGGCCGTACCGGAGACCTTTGGTGTC 1192050
Query 169246 TTGATAGTCCTTACCCTGTTGAAGACCCAAGATCTTCTTGAGATCGTTGAACTCTTGGTT 169305
||||| ||| || | || || |||| ||||||| ||| | | || |||| |||
Sbjct 1192049 AGTATAGTTCTTGCCGGGCTGCAGTCCCATGATCTTCATGATGTTTTGGATTTCTTCGTT 1191990
Query 169306 TGATGTGAGCTGTGTGACAGAGGCATCGCGAACATTCTTACACTTCCCACGAAGAGGGAA 169365
||| ||| || ||||| ||||| || || || || || || || ||
Sbjct 1191989 CTTCATGATCTGACTGTGCGAGGCCTCGCGGACGTTGAGGAGTTTTCCTCGTAGCGGAAA 1191930
Query 169366 GACACCGTAGTGATCACGACCAACGACGGAGAGACCCGCGACT-GCGAGAGTCTTCGCCG 169424
||| ||||||| |||||||| ||||| ||| |||| | | || | ||||| || |
Sbjct 1191929 GACGCCGTAGTTGTCACGACCGACGACACTGAG-TCCGCTAATGGCCAAGGTCTTGGCGG 1191871
Query 169425 AGTCACCCTCGGTGACGATGAGCGTACA-TTTTCCAGATTGTG-CCGTACCCGCCTTGTT 169482
||||||| ||||||| ||||| || || |||||| ||| | ||| || || |||||
Sbjct 1191870 AGTCACCTTCGGTGAGAATGAGGGTGCACTTTTCCGAGTTGCGACCG--CCGGCATTGTT 1191813
Query 169483 CGCATCATCCA-ATTTGGGAATACCAGTAATTTTGGACTTTCGCGTACC 169530
|| || || | ||| || || |||||||||||||| ||| ||
Sbjct 1191812 GGCGTCGTCAAGCTTTTCGACGTCC-TTAATTTTGGACTTTTTCGTGCC 1191765
>seq30
Length=443502
Score = 118 bits (130), Expect = 1e-21
Identities = 122/160 (76%), Gaps = 0/160 (0%)
Strand=Plus/Minus
Query 94796 CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCT 94855
||||||||||||| || | | ||||| || || || |||||||| ||||| || |
Sbjct 288529 CCTTTGCTGAGCGCCTTGTTGGCTTTGCCGCCGTGGAAGGCATCTTCTTTTCTGGCTCTT 288470
Query 94856 TCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACG 94915
||||||| || | ||||||||||||||| || |||||||| || ||| ||| |||||||
Sbjct 288469 TCTGCGCGATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCGGGCCTCACCTTTTCCAACG 288410
Query 94916 AGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955
|||| ||| || |||||||| | ||| || |||||
Sbjct 288409 AGCTCATCAGCCGCGACGAGGGCATGCACACTGACTTTGC 288370
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583258452375280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |