Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945. 1_202015-01-15] 322 sequences; 39,089,698 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq61 190 2e-43 seq1 123 3e-23 seq30 118 1e-21 >seq61 Length=193651 Score = 190 bits (210), Expect = 2e-43 Identities = 640/986 (65%), Gaps = 29/986 (3%) Strand=Plus/Plus Query 104221 CCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGT 104280 ||| ||| | ||| ||||||| || | | ||||| || |||||||||||| || Sbjct 57721 CCCCCAGCAGATGCTCATGCGTGTCTCTGTGGGTATCCACAAGGAAGACATTGACCGTGC 57780 Query 104281 CTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATT---CACGCAACACCAACCCT 104337 | | ||||| ||| ||| |||||| ||| | |||| || ||||| || || || || Sbjct 57781 CATTGAGACCTACAACATGATGTCGCAA---AAGTTCTTTACGCACGCCACGCCCACGCT 57837 Query 104338 CTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGA 104397 |||||| || ||||| || | || || ||||| || |||||||| | || ||||| Sbjct 57838 CTTCAACGCCGGTACCCCGCGCCCGCAGATGTCGAGCTGCTTCCTCGTGCACATGAAGGA 57897 Query 104398 GGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGC 104457 ||||| || | || |||| || || | ||| |||| ||||| |||| || Sbjct 57898 CGACTCGATTGAGGGCATCTTCCAGACGCTCGAGACGTGCGCGCGCATCTCCAAGTACGC 57957 Query 104458 TGGGGGTATTGGGATGCACATCCATGATGTGAGAGC--CAATAAATCTCGTATTCGGGGG 104515 || || ||||| | ||||||| | | | || | || ||| | || Sbjct 57958 CGGCGGCATTGGTGTCAACATCCACAACATTCGCGCTTCGGGAAGCTACGTGGCC--GGC 58015 Query 104516 ACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGC 104575 || || || | || | || || | || ||||| ||||| || |||| ||| || ||| Sbjct 58016 ACCAACGGCAAGTCCAACGGCATCGTGCCCATGCTGCGCGTCTTCAACGACACGGCCCGC 58075 Query 104576 TATGTAAATCAAGCTG--GGC-GTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGG 104632 || || | || | | ||| || ||||| || | || | || |||||||| ||| Sbjct 58076 TACGTGGACCAGGGCGGCGGCAAGCGCAAGGGCTCCTTTGCCATGTACCTTGAGCCCTGG 58135 Query 104633 CACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAG----GC 104688 || || || || || || ||||| | || ||||| ||| | |||||| || Sbjct 58136 CATGCCGACGTCGAAGACTTTATTGAGCTCCGCAAGAACCACGGTAAGGAGGAGAACCGC 58195 Query 104689 GCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGA 104748 ||| ||||| ||||| | ||| |||||| | || || || |||||| || | || || Sbjct 58196 GCG----CGCGACCTCTTTTACGCGCTCTGGGTCCCTGACCTTTTCATGGAGCGCGTCGA 58251 Query 104749 GGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGT 104808 || || ||| ||| | |||||||| || || |||| || ||||| || | | Sbjct 58252 GGCGAACAGCACCTGGACGCTCTTTTGCCCGAACGAGGCCAAGGGGCTCTCGGACGTCTA 58311 Query 104809 GGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGC--G 104866 || || ||||| | | || ||| |||||| | || |||| ||| || | Sbjct 58312 TGGCGACGAGTTCAAGGAGCTCTACGAGCGCTACGAGAAGGAGGGTC--GCGGTCGCAAG 58369 Query 104867 ACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACA 104926 ||| ||| || || | ||| | ||||||| | || | |||||| ||| Sbjct 58370 ACGATGCGCGCCCAGGACCTCTGGTACCAGATTCTCAGCTGCCAGATCGAGACGGGTGTG 58429 Query 104927 CCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTG 104986 || | ||||||| ||| ||||| || |||| ||| || || ||||| | || | Sbjct 58430 CCCTTTATGCTTTTCAAGGACGCATGCAACCGCAAGTCGAACCAGAAGAACCTTGGCATC 58489 Query 104987 ATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCT 105046 |||||| || || ||||| || || ||| | || | || | | |||||| ||| Sbjct 58490 ATCAAGTCCTCGAACCTCTGCACGGAGATCATCGAGTACACTGCCCCGGATGAGGTCGCT 58549 Query 105047 GTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAG--ACAT 105104 || || ||||| || || ||| || | ||||| ||| | || || | | || | Sbjct 58550 GTTTGCAACCTGGCCTCGATCAACCTTCGCAAGTTTGTCAA--CATCGAAGAGGGCACCT 58607 Query 105105 TTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTA 105164 ||| | | | ||| | || || || ||| ||| ||||| ||||||||| | |||| Sbjct 58608 ATGACTTTCAGGGCCTCTATGATGTCACCAAAGTTGTGACCAAGAACCTAAACCGCGTTA 58667 Query 105165 TTGATAGAAATTTTTACCCCGTTGAG 105190 |||| | || ||||||||||| ||| Sbjct 58668 TTGACGGCAACTTTTACCCCGTCGAG 58693 >seq1 Length=1674554 Score = 123 bits (136), Expect = 3e-23 Identities = 278/409 (68%), Gaps = 8/409 (2%) Strand=Plus/Minus Query 169126 CTTGAGAAGACTTGGCCAGAAGTAGTGAATCATATTGAGAATGAGACCCTTGATGTGGGA 169185 ||||||||| ||||| || | ||| || | || | | || ||||||||||| || Sbjct 1192169 CTTGAGAAGCGAGGGCCAAAAATGGTGGATAAAGTTCATGAGCAGTCCCTTGATGTGCGA 1192110 Query 169186 ACCGTCGTTATCGGCATCCGTCATGATCATGAGACGACCATACCGAAGCTCGGAAACATC 169245 ||| || | ||| ||||||||||||||||||| | || ||||| || | || Sbjct 1192109 ACCATCATGATCCTGATCCGTCATGATCATGAGATGGCCGTACCGGAGACCTTTGGTGTC 1192050 Query 169246 TTGATAGTCCTTACCCTGTTGAAGACCCAAGATCTTCTTGAGATCGTTGAACTCTTGGTT 169305 ||||| ||| || | || || |||| ||||||| ||| | | || |||| ||| Sbjct 1192049 AGTATAGTTCTTGCCGGGCTGCAGTCCCATGATCTTCATGATGTTTTGGATTTCTTCGTT 1191990 Query 169306 TGATGTGAGCTGTGTGACAGAGGCATCGCGAACATTCTTACACTTCCCACGAAGAGGGAA 169365 ||| ||| || ||||| ||||| || || || || || || || || Sbjct 1191989 CTTCATGATCTGACTGTGCGAGGCCTCGCGGACGTTGAGGAGTTTTCCTCGTAGCGGAAA 1191930 Query 169366 GACACCGTAGTGATCACGACCAACGACGGAGAGACCCGCGACT-GCGAGAGTCTTCGCCG 169424 ||| ||||||| |||||||| ||||| ||| |||| | | || | ||||| || | Sbjct 1191929 GACGCCGTAGTTGTCACGACCGACGACACTGAG-TCCGCTAATGGCCAAGGTCTTGGCGG 1191871 Query 169425 AGTCACCCTCGGTGACGATGAGCGTACA-TTTTCCAGATTGTG-CCGTACCCGCCTTGTT 169482 ||||||| ||||||| ||||| || || |||||| ||| | ||| || || ||||| Sbjct 1191870 AGTCACCTTCGGTGAGAATGAGGGTGCACTTTTCCGAGTTGCGACCG--CCGGCATTGTT 1191813 Query 169483 CGCATCATCCA-ATTTGGGAATACCAGTAATTTTGGACTTTCGCGTACC 169530 || || || | ||| || || |||||||||||||| ||| || Sbjct 1191812 GGCGTCGTCAAGCTTTTCGACGTCC-TTAATTTTGGACTTTTTCGTGCC 1191765 >seq30 Length=443502 Score = 118 bits (130), Expect = 1e-21 Identities = 122/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 94796 CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCT 94855 ||||||||||||| || | | ||||| || || || |||||||| ||||| || | Sbjct 288529 CCTTTGCTGAGCGCCTTGTTGGCTTTGCCGCCGTGGAAGGCATCTTCTTTTCTGGCTCTT 288470 Query 94856 TCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACG 94915 ||||||| || | ||||||||||||||| || |||||||| || ||| ||| ||||||| Sbjct 288469 TCTGCGCGATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCGGGCCTCACCTTTTCCAACG 288410 Query 94916 AGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 |||| ||| || |||||||| | ||| || ||||| Sbjct 288409 AGCTCATCAGCCGCGACGAGGGCATGCACACTGACTTTGC 288370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583258452375280