Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945. 1_202015-01-15] 322 sequences; 39,089,698 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq7 145 2e-29 seq84 105 2e-17 seq53 95.1 4e-14 >seq7 Length=852142 Score = 145 bits (160), Expect = 2e-29 Identities = 173/232 (75%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || || || ||||||||||| || || || || || || Sbjct 77263 CATACCACCACGAAGGCGGAGCACGAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTC 77204 Query 140567 AGATAAT-GTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAG 140625 | ||| || || || || || || || || ||||| ||||| ||||| |||||||||| Sbjct 77203 -GCTAAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAG 77145 Query 140626 GAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTT 140685 | || || || || ||||||||||| || || || || ||||| | || || || | Sbjct 77144 GGGGGATACCCTCCTTATCCTGAATCTTCTGCTTGACGTTCTCAATGGTGTCCGAAGGCT 77085 Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || ||||| || | ||||| ||||| || || ||||||||||||||||| Sbjct 77084 CGACATCAAGGGTGATGGTCTTGCCGGTGAGAGTCTTTACAAAAATCTGCAT 77033 Score = 140 bits (154), Expect = 1e-27 Identities = 174/236 (74%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 |||||||||||||||| | | || || || || || |||||||| || || || || | Sbjct 77951 TTTACATACCACCACGAAGGCGGAGCACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGT 77892 Query 140563 AATCAGATAA-TGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGA 140621 | || | ||| ||| || ||||| || || || || ||||| || || ||||| |||||| Sbjct 77891 AGTC-GCTAAGTGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGA 77833 Query 140622 TCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGAT 140681 ||||| ||||| || || || ||||| || || || || || ||||||| || || Sbjct 77832 TCAGGGGGAATACCCTCCTTGTCCTGGATCTTCTGCTTGACGTTCTCAATCGTGTCCGAG 77773 Query 140682 GGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || |||| ||||| || || || || || ||||| |||||||| Sbjct 77772 GGCTCGACATCGAGAGTAATAGTCTTGCCAGTCAGAGTCTTGACAAAGATCTGCAT 77717 Score = 136 bits (150), Expect = 1e-26 Identities = 171/232 (74%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || ||||| || ||||||||||| || || || || || || Sbjct 77491 CATACCACCACGGAGGCGGAGCACAAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTC 77432 Query 140567 AGATAAT-GTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAG 140625 | ||| || || || || || || || || ||||| ||||| ||||| |||||||||| Sbjct 77431 -GCTAAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAG 77373 Query 140626 GAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTT 140685 | ||||| || || || |||||||| || || || || ||||| | || || || | Sbjct 77372 GGGGAATACCCTCCTTGTCCTGAATCTTCTGCTTGACGTTCTCAATGGTGTCCGAGGGCT 77313 Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || || || |||| ||||| || || || || || ||||| |||||||| Sbjct 77312 CGACATCGAGAGTAATAGTCTTGCCAGTCAGAGTCTTGACAAAGATCTGCAT 77261 Score = 123 bits (136), Expect = 8e-23 Identities = 168/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || || || ||||||||||| || || || || || || Sbjct 77035 CATACCACCACGAAGGCGGAGCACGAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTC 76976 Query 140567 AGATAAT-GTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAG 140625 | ||| || || || || || || || || ||||| ||||| ||||| |||||||||| Sbjct 76975 -GCTAAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAG 76917 Query 140626 GAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTT 140685 | ||||| || || |||||||| || || || || || ||||| | || || || | Sbjct 76916 GGGGAATGCCCTCCTTATCCTGGATCTTCTGCTTGACGTTCTCAATAGTGTCCGAAGGCT 76857 Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || ||||| || | || || || || || || || || || |||||||| Sbjct 76856 CGACATCAAGGGTGATGGTTTTGCCCGTGAGGGTCTTAACGAAGATCTGCAT 76805 Score = 114 bits (126), Expect = 4e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || ||||| || || || ||||| || || || || || || Sbjct 77719 CATACCACCACGGAGGCGGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 77660 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | || || || || || || || || || || ||||| ||||| ||||||||||| Sbjct 77659 GCTGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCTGCGAAGATGAGACGCTGCTGATCAGG 77600 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||||| || || |||||||| || || || || || ||||| | || || || || Sbjct 77599 GGGAATACCCTCCTTATCCTGGATCTTCTGCTTGACGTTCTCAATGGTGTCCGAAGGCTC 77540 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| || | ||||| || || || || || || || |||||||| Sbjct 77539 GACATCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 77489 >seq84 Length=130366 Score = 105 bits (116), Expect = 2e-17 Identities = 199/291 (68%), Gaps = 5/291 (2%) Strand=Plus/Minus Query 349610 GCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCT 349669 || || || || || || ||||| ||||| || | ||||| || || || || ||| Sbjct 23647 GCCGTCATCACCGTTCCTGCCTACTTTAACGACTCGCAGCGCCAGGCCACCAAGGACGCT 23588 Query 349670 GGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATT 349729 || ||| || || | || || || | || ||||| || ||||| || || || || Sbjct 23587 GGTGTCATCGCCGGCCTCAACGTGCTCCGCATCATTAACGAGCCCACCGCCGCCGCCATC 23528 Query 349730 GCATATGGGCTTGATAA-AATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGG 349788 || || || || || || || ||| | || || | || || || ||| | || Sbjct 23527 GCCTACGGTCTCGACAAGAAGGAGGGC----GAGCGCAACGTGCTCATCTTCGATCTTGG 23472 Query 349789 TGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGC 349848 ||||||||| || ||||| || || || || |||| ||||| || || || || || || Sbjct 23471 TGGTGGTACCTTCGATGTCTCGCTCCTCACCATTGAGGAGGGCATCTTCGAGGTCAAGGC 23412 Query 349849 AACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGT 349899 || |||||||| || || |||||||| || || || || || || ||||| Sbjct 23411 CACCGCTGGTGACACCCACCTTGGTGGCGAGGACTTCGACAACCGCCTCGT 23361 >seq53 Length=241909 Score = 95.1 bits (104), Expect = 4e-14 Identities = 156/225 (69%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||||| | | || || || || || || ||||| || || || || || || Sbjct 193444 ACCACCACGAAGGCGAAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCT 193385 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 | || || || || || || || || || || ||||| || || ||||||||||| || Sbjct 193384 GAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCAGGGGG 193325 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 ||| || || || |||||||| || || || || || || | || || || || || Sbjct 193324 AATACCCTCCTTGTCCTGAATCTTCTGCTTCACGTTCTCGATGGTGTCCGAGGGCTCGAC 193265 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTG 140734 || || || | ||||| || || || || |||||||| ||||| Sbjct 193264 ATCGAGGGTGATGGTCTTACCCGTGAGGGTCTTTACAAAGATCTG 193220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515248148628566