Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945.
1_202015-01-15] 322 sequences; 39,089,698 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq61 293 3e-74
seq1 141 1e-28
seq30 118 1e-21
>seq61
Length=193651
Score = 293 bits (324), Expect = 3e-74
Identities = 429/599 (72%), Gaps = 6/599 (1%)
Strand=Plus/Plus
Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGAC-TACACGCGTGTCCGTGAGACGTAC 53251
||||||| ||| | ||||||||||| || ||| | || |||| | |||||| |||
Sbjct 57735 TCATGCGTGTCTCTGTGGGTATCCACAAGGAAGACATTGAC-CGTGCCATTGAGACCTAC 57793
Query 53252 GACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACG 53311
|| | ||| ||||||| |||||||||||||||||| || || |||||||| |||||
Sbjct 57794 AACATGATGTCGCAAAAGTTCTTTACGCACGCCACGCCCACGCTCTTCAACGCCGGTACC 57853
Query 53312 AATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGC 53371
| ||| |||||||||||||||||||| ||| |||||||| |||||||| || |||
Sbjct 57854 CCGCGCCCGCAGATGTCGAGCTGCTTCCTCGTGCACATGAAGGACGACTCGATTGAGGGC 57913
Query 53372 ATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATC 53431
|||| | |||||||| || ||| || | ||||||||||| | || || || ||| ||
Sbjct 57914 ATCTTCCAGACGCTCGAGACGTGCGCGCGCATCTCCAAGTACGCCGGCGGCATTGGTGTC 57973
Query 53432 CACTGCTCGAACGTCCGTGCGAACGGCACACCA-ATCAAGGGGACGAACGGCGTCGCCGA 53490
|| | ||| | || || ||| | | | | || || |||||| || |
Sbjct 57974 AACATCCACAACATTCGCGC-TTCGGGAAGCTACGTGGCCGGCACCAACGGCAAGTCCAA 58032
Query 53491 TGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGG 53550
|| |||||||| ||||| |||||||||||| |||||||||| ||||| ||||||| ||
Sbjct 58033 CGGCATCGTGCCCATGCTGCGCGTCTTCAACGACACGGCCCGCTACGTGGACCAGGGCGG 58092
Query 53551 TGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGA 53610
|| ||||||||||| || || ||||| ||||| ||||| ||||| |||||| | ||
Sbjct 58093 CGGCAAGCGCAAGGGCTCCTTTGCCATGTACCTTGAGCCCTGGCATGCCGACGTCGAAGA 58152
Query 53611 GTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTAC 53670
||| | ||||| || ||| || ||| | || |||| ||| || ||||| |||
Sbjct 58153 CTTTATTGAGCTCCGCAAGAACCACGGTAAGGAGGAGAACCGCGCGCGCGACCTCTTTTA 58212
Query 53671 AGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGA-GTGGTACC 53729
|| || ||| | || ||||| |||||| | || ||| | || || | ||| |
Sbjct 58213 CGCGCTCTGGGTCCCTGACCTTTTCATGGAGCGCGTCGAGGCGAAC-AGCACCTGGACGC 58271
Query 53730 TGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAG 53788
| | |||||||||||| | || ||| || ||||| || || ||||| || |||
Sbjct 58272 TCTTTTGCCCGAACGAGGCCAAGGGGCTCTCGGACGTCTATGGCGACGAGTTCAAGGAG 58330
Score = 116 bits (128), Expect = 4e-21
Identities = 314/468 (67%), Gaps = 17/468 (4%)
Strand=Plus/Plus
Query 55478 GGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATG 55537
||| |||| ||||| || || || ||||| ||||| || || || || | ||||| |
Sbjct 59006 GGCGTACGTAACTCGCTCCTTGTCGCGCCCATGCCCACGGCCTCAACTTCGCAGATTCTC 59065
Query 55538 GGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCA 55597
|| ||| |||||| || ||||| | || | |||||| ||| |||||| || ||
Sbjct 59066 GGAAACTGCGAGGCCTTTGAGCCTTTTACCAGCAACATGTACTCGCGCCGCGTTCTCGCC 59125
Query 55598 GGTGAGTTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGG 55657
|| ||||| | | | ||| |||||| ||||||||||| | | |||
Sbjct 59126 GGCGAGTTCAACGTCGTTAACGCGCACCTGGTCAAGGACCTCATCTCTCGCGGCCTCTGG 59185
Query 55658 AACCCGCAGAT---CAAGACGGATATTGTGCGGAACGGGGGGTCCGTCCAGAA--TCTG- 55711
| || |||| ||| | || || || || || || || || ||||| |||
Sbjct 59186 ACGCCTGAGATTCGCAAC-CACATCATG-GCCGATCGCGGT-TCGGTGCAGAACATCTCC 59242
Query 55712 GAGATTCCTCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGT 55771
| || || ||||||| ||||| ||||||||||||||| || || || ||
Sbjct 59243 GTCATCCCGGATGACCTCAAGGCACTTTACAAGACGGTGTGGGAGAT--CA-AGCAGCGT 59299
Query 55772 ---CTGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAAC 55828
|| |||||| | || || |||||||| | || |||||||| ||||| || |||
Sbjct 59300 TGCCTCATTGACCTTGCGGCCGACCGTGGTGCCTTTATTGACCAGTCGCAGTCGCTCAAC 59359
Query 55829 ATCTTCATGGA-GAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAA 55887
|| | ||||| || || | |||| ||| | | ||| ||||||||| ||||||
Sbjct 59360 ATTTACATGGCCGAGGCCAACGTTGGC-AAGCTCACTTCGTGCCACTTTTACTCGTGGAA 59418
Query 55888 GAAGGGACTCAAGACGGGTATGTACTATCTGCGGACCCGCGCCAAGGC 55935
| || |||||||||||| | ||||| ||||| || ||| |||||||
Sbjct 59419 GCGCGGCCTCAAGACGGGTCTCTACTACCTGCGTACGCGCCCCAAGGC 59466
>seq1
Length=1674554
Score = 141 bits (156), Expect = 1e-28
Identities = 285/420 (68%), Gaps = 2/420 (0%)
Strand=Plus/Minus
Query 117152 CCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAGAAC 117211
|| || || ||||| | | |||||| || || | ||| |||||||| || | ||| ||
Sbjct 1193029 CCCGTGCCAATACCTTGCGAACCATTGATGAGGACCATGGGCACGACCGGCGCATAGTAC 1192970
Query 117212 TCAGGCTCCACCTGCAGACCGTCGTCCGTGACGTACTTGAGCACCGCATTGTCACTCGGA 117271
| ||||| | | |||| |||||| || ||| | ||| | ||||| ||| | |
Sbjct 1192969 TTGGGCTCGATAGACTGACCATCGTCCTCGAGGTAGTCGAGGAGCGCATCGTCGTGCTCA 1192910
Query 117272 TCGAATATGTTCTTGGTCCACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCA 117331
| ||| | || || || || || || |||||||||||||| | ||||||
Sbjct 1192909 TGGAAGAGCTTGCGCGTGAGAGGCGCGAGACGCGTGAAAATGTAACGGGCAGACGCAGCA 1192850
Query 117332 TCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTG 117391
||||| || || || |||| || ||||| || || || | ||||| | ||||
Sbjct 1192849 TCCTTTCCGCCGAGAATGCGCGAGCCAAATTGGCCGCTGGGGAAGAGCAGGTTGATGTTG 1192790
Query 117392 TTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGC-TCGCCTCACC 117450
|||| ||| |||||| |||| |||| | |||| | ||| | | | || | |||||
Sbjct 1192789 TTGGAGCCAACAAAGGTTTGCGCCATGCTGACGACCGT-CGACGAAAGCGAAACTTCACC 1192731
Query 117451 ATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTCTGA 117510
||||| ||||||| || |||| ||||||||| | ||||| || ||||| ||||| ||
Sbjct 1192730 GTGGTGGTACGCCGAGTGTTCCGACACGTAGCCAACAAGCTGGGCGACCTTGATGTCAGA 1192671
Query 117511 CGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACCATC 117570
||| || ||| | ||| | |||| |||||||| || ||||| || |||||
Sbjct 1192670 GCGCAGCTTGCGCTTAAAGCACGAGTAAAGTACCTTGCGTTGCGAGGGCTTGAGGCCATC 1192611
Score = 111 bits (122), Expect = 2e-19
Identities = 210/308 (68%), Gaps = 6/308 (2%)
Strand=Plus/Minus
Query 117994 GTGGATCATGTTCAGCACGAGCCCCTTGATATGGGAACCGTCCAGATCCGCATCGGTCAT 118053
|||||| | ||||| | || |||||||| || ||||| || ||||| ||| |||||
Sbjct 1192145 GTGGATAAAGTTCATGAGCAGTCCCTTGATGTGCGAACCATCATGATCCTGATCCGTCAT 1192086
Query 118054 GATCATCAGGCGGCCGTACCGTAAATCTCTCAGGGAGT---TATAAACCTTACCATGTTG 118110
|||||| || |||||||||| | | || | || || |||| ||| || | ||
Sbjct 1192085 GATCATGAGATGGCCGTACCGGAGACCTTT---GGTGTCAGTATAGTTCTTGCCGGGCTG 1192029
Query 118111 GAGCCCGAGGATCTTTTTAAGGTTGGAAAATTCCTCATTTTCCGTCACCTGTTTTATGGT 118170
|| || | |||||| | | ||| | ||| || || | | | | ||| | |
Sbjct 1192028 CAGTCCCATGATCTTCATGATGTTTTGGATTTCTTCGTTCTTCATGATCTGACTGTGCGA 1191969
Query 118171 GGCGTCCCGAACGTTGCGCGGCTTACCCCGCAGTGGAAACACGCCAAACTTGTCACGGCC 118230
||| || || |||||| | | || || || || ||||| ||||| | |||||||| ||
Sbjct 1191968 GGCCTCGCGGACGTTGAGGAGTTTTCCTCGTAGCGGAAAGACGCCGTAGTTGTCACGACC 1191909
Query 118231 CACAACGCTCAAGCCGGCAATAGCAAGGGCCTTCGCCGAGTCACCCTCGGTAATAATAAG 118290
|| || || | ||| ||| || | || ||| || |||||||| ||||| | ||| ||
Sbjct 1191908 GACGACACTGAGTCCGCTAATGGCCAAGGTCTTGGCGGAGTCACCTTCGGTGAGAATGAG 1191849
Query 118291 AGTGCACT 118298
|||||||
Sbjct 1191848 GGTGCACT 1191841
Score = 104 bits (114), Expect = 3e-17
Identities = 247/375 (66%), Gaps = 9/375 (2%)
Strand=Plus/Minus
Query 152748 CGGCCAGTACACGTGGAACATGTTGAGGACCAAGCCCTTGATGTGCGATCCGTCAAGATC 152807
|||||| | | ||| || | |||| || | || ||||||||||| ||||||| |||
Sbjct 1396454 CGGCCAAAAGAAGTGAAAGAGATTGATGAGAAGTCCTTTGATGTGCGAACCGTCAAAATC 1396395
Query 152808 CGCGTCGGTCATGATCATCAGACGACCGTAGCGCAGG---------TCACGTAGTGACCC 152858
| || ||||||| ||| | |||||||| || || || | | || |
Sbjct 1396394 CTGATCCGTCATGAGCATGACGCGACCGTACCGAAGCGTAGCCTTCTCCTTTTGCGATGC 1396335
Query 152859 GTAGACCTTTCCATGTTGAAGCCCGAGGATCTTTTTGAGGTTGGAAAATTCCTCATTATC 152918
||| |||| | | |||||| |||||| | | || | |||||||| |
Sbjct 1396334 GTATTTCTTTTTAAAGTCAAGCCCAAGGATCGTGCACAAGTGTTTGATCTCCTCATTTTT 1396275
Query 152919 GGTCACCTGTTTCACCGTGGCATCCCGAACATTGCGCGGCTTTCCCCGGAGTGGAAACAC 152978
| ||| | |||| || || || || ||| |||| || || || || || |||||
Sbjct 1396274 GACTACCGTACGCGCCGTTGCGTCGCGCACGTTGAGCGGTTTGCCGCGAAGCGGGAACAC 1396215
Query 152979 GCCGAACGCGTTGCGGCCTACAACGCTCAGACCGGCAATAGCAAGGGCTTTCGCCGAGTC 153038
|||| | ||| ||| || || ||| || ||| |||| ||||| || || || |||||
Sbjct 1396214 GCCGTAGCCGTCGCGACCCACGACGGGCAAACCTGCAACGGCAAGTGCCTTGGCGGAGTC 1396155
Query 153039 ACCCTCGGTGATAATAAGCGTACAGTCGTGAGACCGATGAGTACCGGCCCAGTTGGCGTC 153098
||| || |||| ||| || || ||| || || || || ||||||||||| ||
Sbjct 1396154 ACCTTCAGTGAGAATGAGGGTCGCCTCGCTCGAGCGCGCCGTCCCCGCCCAGTTGGCATC 1396095
Query 153099 GTCAAGCTTGGGGAT 153113
|| |||||||||||
Sbjct 1396094 CTCGAGCTTGGGGAT 1396080
Score = 82.4 bits (90), Expect = 8e-11
Identities = 183/275 (67%), Gaps = 0/275 (0%)
Strand=Plus/Minus
Query 152025 ACGCGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAA 152084
||||||||| ||||| |||| || |||||||| || || | |||| |||||
Sbjct 1192880 ACGCGTGAAAATGTAACGGGCAGACGCAGCATCCTTTCCGCCGAGAATGCGCGAGCCAAA 1192821
Query 152085 CTGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATT 152144
|| || ||| ||| ||||||| |||||||| ||| || || | || |||| |
Sbjct 1192820 TTGGCCGCTGGGGAAGAGCAGGTTGATGTTGTTGGAGCCAACAAAGGTTTGCGCCATGCT 1192761
Query 152145 CACAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTA 152204
|| | ||| | || ||||||||||||| ||||||| || |||| | |||
Sbjct 1192760 GACGACCGTCGACGAAAGCGAAACTTCACCGTGGTGGTACGCCGAGTGTTCCGACACGTA 1192701
Query 152205 TCCCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAAT 152264
|| | | ||| || ||||| ||||| | ||| || ||| | || | |||||
Sbjct 1192700 GCCAACAAGCTGGGCGACCTTGATGTCAGAGCGCAGCTTGCGCTTAAAGCACGAGTAAAG 1192641
Query 152265 CACCTTGCGCTGGGATGGTTTCAAACCGTCCACCA 152299
|||||||| || || || || | || || ||||
Sbjct 1192640 TACCTTGCGTTGCGAGGGCTTGAGGCCATCGACCA 1192606
>seq30
Length=443502
Score = 118 bits (130), Expect = 1e-21
Identities = 310/464 (67%), Gaps = 23/464 (5%)
Strand=Plus/Plus
Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522
|| || || || ||||||||||||||||||||||| || | || ||||||| ||||||
Sbjct 288082 TACTCGCCAACGCGCTTTTCAAAAAAGTTGGTCTTGCCCTGCATCGAGATGAGGTCCATC 288141
Query 74523 CAGTCGAAAGGGTTCTTTGCAC--CGTAAATAGGCTTCTCCCCAAACTGTGCCATGA--- 74577
||||| || ||||| |||||| ||||||| | ||| || | | | | |||
Sbjct 288142 CAGTCAAAGGGGTT--TTGCACGCCGTAAATGGCCTTAAAGCCGAGC---GACTTGACCA 288196
Query 74578 GGCGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTT 74637
| || || |||||||| | ||||||||| ||| | | ||||||||| || |
Sbjct 288197 GACGGTCAGCCACAAACTTGATGTACTGCTGCATGAGGGTAGAGTTCATGCCGATAAGCT 288256
Query 74638 TGCACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTGGACAATCT 74697
| || || || |||| ||| ||||| | ||| | ||| ||| | | || ||||
Sbjct 288257 CGACGGGGAGCGCGTCGGAGATGAACTCGCACTCAATGTCGACGGCCGACTCGATGATCT 288316
Query 74698 TGTGAATGT---CTTTGGAAGGGCACTTTTCC---CTCAGGTGAGAGTAAAGCGTCACGG 74751
| | | | | | || |||| | | || | |||| | | || |
Sbjct 288317 CGCGCACGCGGGCCTCCGA-GGGCGGGTGGCGGAGCTTGCGGAAGAGGA----GGCAAG- 288370
Query 74752 CAAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAG 74811
|||| || ||| ||| || || | ||| || | || || ||||| | ||||| |
Sbjct 288371 CAAAGTCAGTGTGCATGCCCTCGTCGCGGCTGATGAGCTCGTTGGAAAAGGTGAGGCCCG 288430
Query 74812 GCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGC 74871
|||| || || |||||||| | ||||||||| || ||||| || ||| ||||||||||
Sbjct 288431 GCATGAGGCCGCGCTTCTTGAGCCAAAAGATCGCGCAGAAAGAGCCAGAAAAGAAGATGC 288490
Query 74872 CTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCA 74915
|||| || |||||| | |||||||| | || || ||||||
Sbjct 288491 CTTCCACGGCGGCAAAGCCAACAAGGCGCTCAGC-AAAGGTGCA 288533
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547213797455600
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