Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945. 1_202015-01-15] 322 sequences; 39,089,698 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq61 293 3e-74 seq1 141 1e-28 seq30 118 1e-21 >seq61 Length=193651 Score = 293 bits (324), Expect = 3e-74 Identities = 429/599 (72%), Gaps = 6/599 (1%) Strand=Plus/Plus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGAC-TACACGCGTGTCCGTGAGACGTAC 53251 ||||||| ||| | ||||||||||| || ||| | || |||| | |||||| ||| Sbjct 57735 TCATGCGTGTCTCTGTGGGTATCCACAAGGAAGACATTGAC-CGTGCCATTGAGACCTAC 57793 Query 53252 GACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACG 53311 || | ||| ||||||| |||||||||||||||||| || || |||||||| ||||| Sbjct 57794 AACATGATGTCGCAAAAGTTCTTTACGCACGCCACGCCCACGCTCTTCAACGCCGGTACC 57853 Query 53312 AATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGC 53371 | ||| |||||||||||||||||||| ||| |||||||| |||||||| || ||| Sbjct 57854 CCGCGCCCGCAGATGTCGAGCTGCTTCCTCGTGCACATGAAGGACGACTCGATTGAGGGC 57913 Query 53372 ATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATC 53431 |||| | |||||||| || ||| || | ||||||||||| | || || || ||| || Sbjct 57914 ATCTTCCAGACGCTCGAGACGTGCGCGCGCATCTCCAAGTACGCCGGCGGCATTGGTGTC 57973 Query 53432 CACTGCTCGAACGTCCGTGCGAACGGCACACCA-ATCAAGGGGACGAACGGCGTCGCCGA 53490 || | ||| | || || ||| | | | | || || |||||| || | Sbjct 57974 AACATCCACAACATTCGCGC-TTCGGGAAGCTACGTGGCCGGCACCAACGGCAAGTCCAA 58032 Query 53491 TGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGG 53550 || |||||||| ||||| |||||||||||| |||||||||| ||||| ||||||| || Sbjct 58033 CGGCATCGTGCCCATGCTGCGCGTCTTCAACGACACGGCCCGCTACGTGGACCAGGGCGG 58092 Query 53551 TGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGA 53610 || ||||||||||| || || ||||| ||||| ||||| ||||| |||||| | || Sbjct 58093 CGGCAAGCGCAAGGGCTCCTTTGCCATGTACCTTGAGCCCTGGCATGCCGACGTCGAAGA 58152 Query 53611 GTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTAC 53670 ||| | ||||| || ||| || ||| | || |||| ||| || ||||| ||| Sbjct 58153 CTTTATTGAGCTCCGCAAGAACCACGGTAAGGAGGAGAACCGCGCGCGCGACCTCTTTTA 58212 Query 53671 AGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGA-GTGGTACC 53729 || || ||| | || ||||| |||||| | || ||| | || || | ||| | Sbjct 58213 CGCGCTCTGGGTCCCTGACCTTTTCATGGAGCGCGTCGAGGCGAAC-AGCACCTGGACGC 58271 Query 53730 TGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAG 53788 | | |||||||||||| | || ||| || ||||| || || ||||| || ||| Sbjct 58272 TCTTTTGCCCGAACGAGGCCAAGGGGCTCTCGGACGTCTATGGCGACGAGTTCAAGGAG 58330 Score = 116 bits (128), Expect = 4e-21 Identities = 314/468 (67%), Gaps = 17/468 (4%) Strand=Plus/Plus Query 55478 GGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATG 55537 ||| |||| ||||| || || || ||||| ||||| || || || || | ||||| | Sbjct 59006 GGCGTACGTAACTCGCTCCTTGTCGCGCCCATGCCCACGGCCTCAACTTCGCAGATTCTC 59065 Query 55538 GGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCA 55597 || ||| |||||| || ||||| | || | |||||| ||| |||||| || || Sbjct 59066 GGAAACTGCGAGGCCTTTGAGCCTTTTACCAGCAACATGTACTCGCGCCGCGTTCTCGCC 59125 Query 55598 GGTGAGTTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGG 55657 || ||||| | | | ||| |||||| ||||||||||| | | ||| Sbjct 59126 GGCGAGTTCAACGTCGTTAACGCGCACCTGGTCAAGGACCTCATCTCTCGCGGCCTCTGG 59185 Query 55658 AACCCGCAGAT---CAAGACGGATATTGTGCGGAACGGGGGGTCCGTCCAGAA--TCTG- 55711 | || |||| ||| | || || || || || || || || ||||| ||| Sbjct 59186 ACGCCTGAGATTCGCAAC-CACATCATG-GCCGATCGCGGT-TCGGTGCAGAACATCTCC 59242 Query 55712 GAGATTCCTCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGT 55771 | || || ||||||| ||||| ||||||||||||||| || || || || Sbjct 59243 GTCATCCCGGATGACCTCAAGGCACTTTACAAGACGGTGTGGGAGAT--CA-AGCAGCGT 59299 Query 55772 ---CTGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAAC 55828 || |||||| | || || |||||||| | || |||||||| ||||| || ||| Sbjct 59300 TGCCTCATTGACCTTGCGGCCGACCGTGGTGCCTTTATTGACCAGTCGCAGTCGCTCAAC 59359 Query 55829 ATCTTCATGGA-GAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAA 55887 || | ||||| || || | |||| ||| | | ||| ||||||||| |||||| Sbjct 59360 ATTTACATGGCCGAGGCCAACGTTGGC-AAGCTCACTTCGTGCCACTTTTACTCGTGGAA 59418 Query 55888 GAAGGGACTCAAGACGGGTATGTACTATCTGCGGACCCGCGCCAAGGC 55935 | || |||||||||||| | ||||| ||||| || ||| ||||||| Sbjct 59419 GCGCGGCCTCAAGACGGGTCTCTACTACCTGCGTACGCGCCCCAAGGC 59466 >seq1 Length=1674554 Score = 141 bits (156), Expect = 1e-28 Identities = 285/420 (68%), Gaps = 2/420 (0%) Strand=Plus/Minus Query 117152 CCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAGAAC 117211 || || || ||||| | | |||||| || || | ||| |||||||| || | ||| || Sbjct 1193029 CCCGTGCCAATACCTTGCGAACCATTGATGAGGACCATGGGCACGACCGGCGCATAGTAC 1192970 Query 117212 TCAGGCTCCACCTGCAGACCGTCGTCCGTGACGTACTTGAGCACCGCATTGTCACTCGGA 117271 | ||||| | | |||| |||||| || ||| | ||| | ||||| ||| | | Sbjct 1192969 TTGGGCTCGATAGACTGACCATCGTCCTCGAGGTAGTCGAGGAGCGCATCGTCGTGCTCA 1192910 Query 117272 TCGAATATGTTCTTGGTCCACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCA 117331 | ||| | || || || || || || |||||||||||||| | |||||| Sbjct 1192909 TGGAAGAGCTTGCGCGTGAGAGGCGCGAGACGCGTGAAAATGTAACGGGCAGACGCAGCA 1192850 Query 117332 TCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTG 117391 ||||| || || || |||| || ||||| || || || | ||||| | |||| Sbjct 1192849 TCCTTTCCGCCGAGAATGCGCGAGCCAAATTGGCCGCTGGGGAAGAGCAGGTTGATGTTG 1192790 Query 117392 TTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGC-TCGCCTCACC 117450 |||| ||| |||||| |||| |||| | |||| | ||| | | | || | ||||| Sbjct 1192789 TTGGAGCCAACAAAGGTTTGCGCCATGCTGACGACCGT-CGACGAAAGCGAAACTTCACC 1192731 Query 117451 ATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTCTGA 117510 ||||| ||||||| || |||| ||||||||| | ||||| || ||||| ||||| || Sbjct 1192730 GTGGTGGTACGCCGAGTGTTCCGACACGTAGCCAACAAGCTGGGCGACCTTGATGTCAGA 1192671 Query 117511 CGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACCATC 117570 ||| || ||| | ||| | |||| |||||||| || ||||| || ||||| Sbjct 1192670 GCGCAGCTTGCGCTTAAAGCACGAGTAAAGTACCTTGCGTTGCGAGGGCTTGAGGCCATC 1192611 Score = 111 bits (122), Expect = 2e-19 Identities = 210/308 (68%), Gaps = 6/308 (2%) Strand=Plus/Minus Query 117994 GTGGATCATGTTCAGCACGAGCCCCTTGATATGGGAACCGTCCAGATCCGCATCGGTCAT 118053 |||||| | ||||| | || |||||||| || ||||| || ||||| ||| ||||| Sbjct 1192145 GTGGATAAAGTTCATGAGCAGTCCCTTGATGTGCGAACCATCATGATCCTGATCCGTCAT 1192086 Query 118054 GATCATCAGGCGGCCGTACCGTAAATCTCTCAGGGAGT---TATAAACCTTACCATGTTG 118110 |||||| || |||||||||| | | || | || || |||| ||| || | || Sbjct 1192085 GATCATGAGATGGCCGTACCGGAGACCTTT---GGTGTCAGTATAGTTCTTGCCGGGCTG 1192029 Query 118111 GAGCCCGAGGATCTTTTTAAGGTTGGAAAATTCCTCATTTTCCGTCACCTGTTTTATGGT 118170 || || | |||||| | | ||| | ||| || || | | | | ||| | | Sbjct 1192028 CAGTCCCATGATCTTCATGATGTTTTGGATTTCTTCGTTCTTCATGATCTGACTGTGCGA 1191969 Query 118171 GGCGTCCCGAACGTTGCGCGGCTTACCCCGCAGTGGAAACACGCCAAACTTGTCACGGCC 118230 ||| || || |||||| | | || || || || ||||| ||||| | |||||||| || Sbjct 1191968 GGCCTCGCGGACGTTGAGGAGTTTTCCTCGTAGCGGAAAGACGCCGTAGTTGTCACGACC 1191909 Query 118231 CACAACGCTCAAGCCGGCAATAGCAAGGGCCTTCGCCGAGTCACCCTCGGTAATAATAAG 118290 || || || | ||| ||| || | || ||| || |||||||| ||||| | ||| || Sbjct 1191908 GACGACACTGAGTCCGCTAATGGCCAAGGTCTTGGCGGAGTCACCTTCGGTGAGAATGAG 1191849 Query 118291 AGTGCACT 118298 ||||||| Sbjct 1191848 GGTGCACT 1191841 Score = 104 bits (114), Expect = 3e-17 Identities = 247/375 (66%), Gaps = 9/375 (2%) Strand=Plus/Minus Query 152748 CGGCCAGTACACGTGGAACATGTTGAGGACCAAGCCCTTGATGTGCGATCCGTCAAGATC 152807 |||||| | | ||| || | |||| || | || ||||||||||| ||||||| ||| Sbjct 1396454 CGGCCAAAAGAAGTGAAAGAGATTGATGAGAAGTCCTTTGATGTGCGAACCGTCAAAATC 1396395 Query 152808 CGCGTCGGTCATGATCATCAGACGACCGTAGCGCAGG---------TCACGTAGTGACCC 152858 | || ||||||| ||| | |||||||| || || || | | || | Sbjct 1396394 CTGATCCGTCATGAGCATGACGCGACCGTACCGAAGCGTAGCCTTCTCCTTTTGCGATGC 1396335 Query 152859 GTAGACCTTTCCATGTTGAAGCCCGAGGATCTTTTTGAGGTTGGAAAATTCCTCATTATC 152918 ||| |||| | | |||||| |||||| | | || | |||||||| | Sbjct 1396334 GTATTTCTTTTTAAAGTCAAGCCCAAGGATCGTGCACAAGTGTTTGATCTCCTCATTTTT 1396275 Query 152919 GGTCACCTGTTTCACCGTGGCATCCCGAACATTGCGCGGCTTTCCCCGGAGTGGAAACAC 152978 | ||| | |||| || || || || ||| |||| || || || || || ||||| Sbjct 1396274 GACTACCGTACGCGCCGTTGCGTCGCGCACGTTGAGCGGTTTGCCGCGAAGCGGGAACAC 1396215 Query 152979 GCCGAACGCGTTGCGGCCTACAACGCTCAGACCGGCAATAGCAAGGGCTTTCGCCGAGTC 153038 |||| | ||| ||| || || ||| || ||| |||| ||||| || || || ||||| Sbjct 1396214 GCCGTAGCCGTCGCGACCCACGACGGGCAAACCTGCAACGGCAAGTGCCTTGGCGGAGTC 1396155 Query 153039 ACCCTCGGTGATAATAAGCGTACAGTCGTGAGACCGATGAGTACCGGCCCAGTTGGCGTC 153098 ||| || |||| ||| || || ||| || || || || ||||||||||| || Sbjct 1396154 ACCTTCAGTGAGAATGAGGGTCGCCTCGCTCGAGCGCGCCGTCCCCGCCCAGTTGGCATC 1396095 Query 153099 GTCAAGCTTGGGGAT 153113 || ||||||||||| Sbjct 1396094 CTCGAGCTTGGGGAT 1396080 Score = 82.4 bits (90), Expect = 8e-11 Identities = 183/275 (67%), Gaps = 0/275 (0%) Strand=Plus/Minus Query 152025 ACGCGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAA 152084 ||||||||| ||||| |||| || |||||||| || || | |||| ||||| Sbjct 1192880 ACGCGTGAAAATGTAACGGGCAGACGCAGCATCCTTTCCGCCGAGAATGCGCGAGCCAAA 1192821 Query 152085 CTGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATT 152144 || || ||| ||| ||||||| |||||||| ||| || || | || |||| | Sbjct 1192820 TTGGCCGCTGGGGAAGAGCAGGTTGATGTTGTTGGAGCCAACAAAGGTTTGCGCCATGCT 1192761 Query 152145 CACAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTA 152204 || | ||| | || ||||||||||||| ||||||| || |||| | ||| Sbjct 1192760 GACGACCGTCGACGAAAGCGAAACTTCACCGTGGTGGTACGCCGAGTGTTCCGACACGTA 1192701 Query 152205 TCCCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAAT 152264 || | | ||| || ||||| ||||| | ||| || ||| | || | ||||| Sbjct 1192700 GCCAACAAGCTGGGCGACCTTGATGTCAGAGCGCAGCTTGCGCTTAAAGCACGAGTAAAG 1192641 Query 152265 CACCTTGCGCTGGGATGGTTTCAAACCGTCCACCA 152299 |||||||| || || || || | || || |||| Sbjct 1192640 TACCTTGCGTTGCGAGGGCTTGAGGCCATCGACCA 1192606 >seq30 Length=443502 Score = 118 bits (130), Expect = 1e-21 Identities = 310/464 (67%), Gaps = 23/464 (5%) Strand=Plus/Plus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || || || || ||||||||||||||||||||||| || | || ||||||| |||||| Sbjct 288082 TACTCGCCAACGCGCTTTTCAAAAAAGTTGGTCTTGCCCTGCATCGAGATGAGGTCCATC 288141 Query 74523 CAGTCGAAAGGGTTCTTTGCAC--CGTAAATAGGCTTCTCCCCAAACTGTGCCATGA--- 74577 ||||| || ||||| |||||| ||||||| | ||| || | | | | ||| Sbjct 288142 CAGTCAAAGGGGTT--TTGCACGCCGTAAATGGCCTTAAAGCCGAGC---GACTTGACCA 288196 Query 74578 GGCGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTT 74637 | || || |||||||| | ||||||||| ||| | | ||||||||| || | Sbjct 288197 GACGGTCAGCCACAAACTTGATGTACTGCTGCATGAGGGTAGAGTTCATGCCGATAAGCT 288256 Query 74638 TGCACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTGGACAATCT 74697 | || || || |||| ||| ||||| | ||| | ||| ||| | | || |||| Sbjct 288257 CGACGGGGAGCGCGTCGGAGATGAACTCGCACTCAATGTCGACGGCCGACTCGATGATCT 288316 Query 74698 TGTGAATGT---CTTTGGAAGGGCACTTTTCC---CTCAGGTGAGAGTAAAGCGTCACGG 74751 | | | | | | || |||| | | || | |||| | | || | Sbjct 288317 CGCGCACGCGGGCCTCCGA-GGGCGGGTGGCGGAGCTTGCGGAAGAGGA----GGCAAG- 288370 Query 74752 CAAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAG 74811 |||| || ||| ||| || || | ||| || | || || ||||| | ||||| | Sbjct 288371 CAAAGTCAGTGTGCATGCCCTCGTCGCGGCTGATGAGCTCGTTGGAAAAGGTGAGGCCCG 288430 Query 74812 GCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGC 74871 |||| || || |||||||| | ||||||||| || ||||| || ||| |||||||||| Sbjct 288431 GCATGAGGCCGCGCTTCTTGAGCCAAAAGATCGCGCAGAAAGAGCCAGAAAAGAAGATGC 288490 Query 74872 CTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCA 74915 |||| || |||||| | |||||||| | || || |||||| Sbjct 288491 CTTCCACGGCGGCAAAGCCAACAAGGCGCTCAGC-AAAGGTGCA 288533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547213797455600