Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945.
1_202015-01-15] 322 sequences; 39,089,698 total letters
Query= NC_028461.1
Length=127011
Score E
Sequences producing significant alignments: (Bits) Value
seq91 145 6e-30
>seq91
Length=99162
Score = 145 bits (160), Expect = 6e-30
Identities = 332/496 (67%), Gaps = 8/496 (2%)
Strand=Plus/Minus
Query 29965 GTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGA 30024
|| |||||| | | |||| ||| ||||||||||| || || || || ||||| || ||
Sbjct 43025 GTGCGTGAGCAAGGCGTAGGAGGCAATGTTAAAGGGCACGCCAAGACCAATGTCACCAGA 42966
Query 30025 CCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGAC---ACATGGC 30081
| |||||| | || ||||| ||||| || | | || || |||||| |||||
Sbjct 42965 ACGCTGGTACATTTGGCACGAAAGCTCGCCCTTGGAAACATAGAACTGAGCAAACATG-- 42908
Query 30082 GTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGAT 30141
||||| || ||||| ||||| ||| || | |||||||| || | | ||| ||
Sbjct 42907 -TGGCAGGGCGGAAGCGCCATAAGGTGAAAAGCAGCCGGGTTCCACGCCGAGAGGATCAT 42849
Query 30142 GCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCA-GCTGATCCACCC 30200
||| | || | |||||| || | || || |||| | | ||| |||| || || |
Sbjct 42848 GCGACGATCGTTGGGGTTGGTCTTAATCGTGTGCACGA-GCTGCGCAAGCTGGTCGACAC 42790
Query 30201 CCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGA 30260
|| | ||||||||||| | ||| ||||| || || || || |||| |||||| |
Sbjct 42789 CCTTGCCCGAGTAGTCATCGTGCATCGTTGTGTAGTCCGCACCAAAGTGCCGCCACTGAA 42730
Query 30261 ACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAA 30320
| || || || || || ||||| || || || | || || ||| ||||||| | |
Sbjct 42729 AACCATAGACGGGGCCGAGGTCGCCTTCCTCTCGGTCTGTGAGGCCGATCTTGTCGAGAT 42670
Query 30321 AGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGT 30380
| || | ||| || ||| | ||||| || | | ||| || || |||| |
Sbjct 42669 ATTCACGGGACCCATTGCCATCCCAAATGTGGATGTTCTTTTCTTGCAGTGTCTTGGCGC 42610
Query 30381 TTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCT 30440
| ||| ||| | |||||| || |||||||| ||||| | ||||||||| | ||
Sbjct 42609 TCGTGTCGCCTGACATGAACCAAAGAAGCTCCTCGGCGACGCCGCGCCAAAAGACGCGCT 42550
Query 30441 TGGTCGTGAGGAGGGG 30456
| |||||||| || ||
Sbjct 42549 TCGTCGTGAGAAGCGG 42534
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 406308805485624
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |