Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945. 1_202015-01-15] 322 sequences; 39,089,698 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq91 145 6e-30 >seq91 Length=99162 Score = 145 bits (160), Expect = 6e-30 Identities = 332/496 (67%), Gaps = 8/496 (2%) Strand=Plus/Minus Query 29965 GTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGA 30024 || |||||| | | |||| ||| ||||||||||| || || || || ||||| || || Sbjct 43025 GTGCGTGAGCAAGGCGTAGGAGGCAATGTTAAAGGGCACGCCAAGACCAATGTCACCAGA 42966 Query 30025 CCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGAC---ACATGGC 30081 | |||||| | || ||||| ||||| || | | || || |||||| ||||| Sbjct 42965 ACGCTGGTACATTTGGCACGAAAGCTCGCCCTTGGAAACATAGAACTGAGCAAACATG-- 42908 Query 30082 GTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGAT 30141 ||||| || ||||| ||||| ||| || | |||||||| || | | ||| || Sbjct 42907 -TGGCAGGGCGGAAGCGCCATAAGGTGAAAAGCAGCCGGGTTCCACGCCGAGAGGATCAT 42849 Query 30142 GCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCA-GCTGATCCACCC 30200 ||| | || | |||||| || | || || |||| | | ||| |||| || || | Sbjct 42848 GCGACGATCGTTGGGGTTGGTCTTAATCGTGTGCACGA-GCTGCGCAAGCTGGTCGACAC 42790 Query 30201 CCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGA 30260 || | ||||||||||| | ||| ||||| || || || || |||| |||||| | Sbjct 42789 CCTTGCCCGAGTAGTCATCGTGCATCGTTGTGTAGTCCGCACCAAAGTGCCGCCACTGAA 42730 Query 30261 ACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAA 30320 | || || || || || ||||| || || || | || || ||| ||||||| | | Sbjct 42729 AACCATAGACGGGGCCGAGGTCGCCTTCCTCTCGGTCTGTGAGGCCGATCTTGTCGAGAT 42670 Query 30321 AGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGT 30380 | || | ||| || ||| | ||||| || | | ||| || || |||| | Sbjct 42669 ATTCACGGGACCCATTGCCATCCCAAATGTGGATGTTCTTTTCTTGCAGTGTCTTGGCGC 42610 Query 30381 TTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCT 30440 | ||| ||| | |||||| || |||||||| ||||| | ||||||||| | || Sbjct 42609 TCGTGTCGCCTGACATGAACCAAAGAAGCTCCTCGGCGACGCCGCGCCAAAAGACGCGCT 42550 Query 30441 TGGTCGTGAGGAGGGG 30456 | |||||||| || || Sbjct 42549 TCGTCGTGAGAAGCGG 42534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406308805485624