Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945. 1_202015-01-15] 322 sequences; 39,089,698 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq91 122 8e-23 >seq91 Length=99162 Score = 122 bits (134), Expect = 8e-23 Identities = 327/496 (66%), Gaps = 8/496 (2%) Strand=Plus/Plus Query 34223 CCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGGTTC 34282 ||||| || |||||||| || || | ||| ||||| | ||||||||| || |||||| Sbjct 42534 CCGCTTCTCACGACGAAGCGCGTCTTTTGGCGCGGCGTCGCCGAGGAGCTTCTTTGGTTC 42593 Query 34283 GTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCT 34342 || || | ||||| | ||||| || | | | || ||||| | Sbjct 42594 ATGTCAGGCGACACGAGCGCCAAGACACTGCAAGAAAAGAACATCCACATTTGGGATGGC 42653 Query 34343 CACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTG 34402 | ||||| || || | ||| |||||| || || || || ||||| |||||| | Sbjct 42654 AATGGGTCCCGTGAATATCTCGACAAGATCGGCCTCACAGACCGAGAGGAAGGCGACCTC 42713 Query 34403 GGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCGAAGCG 34462 ||||| ||||| || || |||||| | |||||||| ||||| || || | | Sbjct 42714 GGCCCCGTCTATGGTTTTCAGTGGCGGCACTTTGGTGCGGACTACACAACGATGCACGAT 42773 Query 34463 GACTATTCGGGACAGGGAGCGGACCAGCT---GCAGTACGTGATCGACACCTTGAAGCGG 34519 ||||| ||||| |||| | |||||||| |||| |||| |||| | ||| Sbjct 42774 GACTACTCGGGCAAGGGTGTCGACCAGCTTGCGCAGCTCGTGC---ACACGATTAAGACC 42830 Query 34520 AACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATG 34579 ||||| | || | | || | | | |||||||||||| | | | | || ||| Sbjct 42831 AACCCCAACGATCGTCGCATGATCCTCTCGGCGTGGAACCCGGCTGCTTTTCACCTTATG 42890 Query 34580 GCGCTCCCCCCGTGCCACACCCTCTGC-CAATTCTACGTCGCGAATGGGGAGCTGTCCTG 34638 ||||| || || ||||||| | ||| || ||||| || | || || ||||| || || Sbjct 42891 GCGCTTCCGCCCTGCCACA-TGTTTGCTCAGTTCTATGTTTCCAAGGGCGAGCTTTCGTG 42949 Query 34639 CCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTA 34698 ||| | || || || || || ||||| || | || ||||| || |||||||| || Sbjct 42950 CCAAATGTACCAGCGTTCTGGTGACATTGGTCTTGGCGTGCCCTTTAACATTGCCTCCTA 43009 Query 34699 CGCTCTGCTCACGTAC 34714 ||| |||||||| || Sbjct 43010 CGCCTTGCTCACGCAC 43025 Score = 122 bits (134), Expect = 8e-23 Identities = 327/496 (66%), Gaps = 8/496 (2%) Strand=Plus/Minus Query 6631 GTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATGTCTCCCGA 6690 || |||||||| ||||| |||||||| || ||||| || | || ||||| || || Sbjct 43025 GTGCGTGAGCAAGGCGTAGGAGGCAATGTTAAAGGGCACGCCAAGACCAATGTCACCAGA 42966 Query 6691 TCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTG-GCAGAGGGTGT 6749 || || || | ||||| || ||||| || || | || ||||| || ||| | ||| Sbjct 42965 ACGCTGGTACATTTGGCACGAAAGCTCGCCCTTGGAAACATAGAACTGAGCAAACA-TGT 42907 Query 6750 GGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATCACGATCC 6809 |||| || || |||||||| || | | | | |||||||||||| | | | || | Sbjct 42906 GGCAGGGCGGAAGCGCCATAAGGTGAAAAGCAGCCGGGTTCCACGCCGAGAGGATCATGC 42847 Query 6810 TTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGC---AGCTGGTCCGCTC 6866 | || | ||||| ||| | |||| |||| |||| |||||||| | | Sbjct 42846 GACGATCGTTGGGGTTGGTCTTAATCGTGT---GCACGAGCTGCGCAAGCTGGTCGACAC 42790 Query 6867 CCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAAGTGTCTCCACTGGA 6926 ||| ||||| ||||| | | || || ||||| |||||||| | |||||| | Sbjct 42789 CCTTGCCCGAGTAGTCATCGTGCATCGTTGTGTAGTCCGCACCAAAGTGCCGCCACTGAA 42730 Query 6927 ACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACCCCCGCTTGTCCAGAA 6986 | || ||||| ||||| | |||||| ||||| || || || || |||||| ||| Sbjct 42729 AACCATAGACGGGGCCGAGGTCGCCTTCCTCTCGGTCTGTGAGGCCGATCTTGTCGAGAT 42670 Query 6987 AGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCGGGACGAGAGCTCCTTGGTGT 7046 | || || ||||| | | ||||| || | | | || ||||| | Sbjct 42669 ATTCACGGGACCCATTGCCATCCCAAATGTGGATGTTCTTTTCTTGCAGTGTCTTGGCGC 42610 Query 7047 TCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACGCCCTTCCAGTACACACGTT 7106 ||||| | || || |||||| || ||||||||| | ||||| ||| | || || | Sbjct 42609 TCGTGTCGCCTGACATGAACCAAAGAAGCTCCTCGGCGACGCCGCGCCAAAAGACGCGCT 42550 Query 7107 TCGTCGTCAGCAGCGG 7122 ||||||| || ||||| Sbjct 42549 TCGTCGTGAGAAGCGG 42534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448260595743840