Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945. 1_202015-01-15] 322 sequences; 39,089,698 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq53 188 2e-42 seq7 170 4e-37 seq1 156 1e-32 seq49 154 3e-32 >seq53 Length=241909 Score = 188 bits (208), Expect = 2e-42 Identities = 173/219 (79%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | ||||| ||||| || |||||||| || |||||||| || || || || Sbjct 193438 ACGAAGGCGAAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGCGT 193379 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || || || ||||||||||| |||||||| ||||| || || ||||| |||| || Sbjct 193378 GCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCAGGGGGAATACC 193319 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||||| ||||| || |||||||| ||||||||||| ||| || || ||||| Sbjct 193318 CTCCTTGTCCTGAATCTTCTGCTTCACGTTCTCGATGGTGTCCGAGGGCTCGACATCGAG 193259 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTG 211111 ||||| ||||| |||||||| ||||||||||| | ||| Sbjct 193258 GGTGATGGTCTTACCCGTGAGGGTCTTTACAAAGATCTG 193220 >seq7 Length=852142 Score = 170 bits (188), Expect = 4e-37 Identities = 165/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || |||||||| ||||| ||||| || |||||||| || || ||| || | || || Sbjct 77472 AGCACAAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTAAGCGTGCGGCCGTCC 77413 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| || || || || ||||| |||| || ||||||||| Sbjct 77412 TCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGAATACCCTCCTTGTCC 77353 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || || ||||| || |||||||| ||| || || |||||||| || ||| Sbjct 77352 TGAATCTTCTGCTTGACGTTCTCAATGGTGTCCGAGGGCTCGACATCGAGAGTAATAGTC 77293 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || |||||||| ||||| | |||||| Sbjct 77292 TTGCCAGTCAGAGTCTTGACAAAGATCTGCAT 77261 Score = 167 bits (184), Expect = 5e-36 Identities = 170/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || ||||| || || ||||| || |||||||| || || ||| || Sbjct 77938 ACGAAGGCGGAGCACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTAAGTGT 77879 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| || ||||||||||| ||||| || || || || || ||||| |||| || Sbjct 77878 GCGGCCATCCTCGAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGATCAGGGGGAATACC 77819 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||||||||||| || || ||||| || || ||||| ||| || || ||||| Sbjct 77818 CTCCTTGTCCTGGATCTTCTGCTTGACGTTCTCAATCGTGTCCGAGGGCTCGACATCGAG 77759 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| || ||||| || || |||||||| ||||| | |||||| Sbjct 77758 AGTAATAGTCTTGCCAGTCAGAGTCTTGACAAAGATCTGCAT 77717 Score = 161 bits (178), Expect = 2e-34 Identities = 169/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || ||||| ||||| ||||| || |||||||| || || ||| || Sbjct 77254 ACGAAGGCGGAGCACGAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTAAGCGT 77195 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || || || ||||||||||| |||||||| || || || || ||||| || | || Sbjct 77194 GCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGGATACC 77135 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||| ||||| ||||| || || ||||| || |||||||| || || || || || Sbjct 77134 CTCCTTATCCTGAATCTTCTGCTTGACGTTCTCAATGGTGTCCGAAGGCTCGACATCAAG 77075 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| || ||||||||||||||||| | |||||| Sbjct 77074 GGTGATGGTCTTGCCGGTGAGAGTCTTTACAAAAATCTGCAT 77033 Score = 161 bits (178), Expect = 2e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || |||||||| || |||||||| || |||||||| || || || || | || || Sbjct 77700 AGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCC 77641 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||||||||||||||| || || || || ||||| |||| || ||||| ||| Sbjct 77640 TCGAGCTGCTTGCCTGCGAAGATGAGACGCTGCTGATCAGGGGGAATACCCTCCTTATCC 77581 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || ||||| || |||||||| || || || || || ||||| ||| Sbjct 77580 TGGATCTTCTGCTTGACGTTCTCAATGGTGTCCGAAGGCTCGACATCAAGGGTGATGGTC 77521 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || |||||||| ||||| || || | |||||| Sbjct 77520 TTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 77489 Score = 154 bits (170), Expect = 3e-32 Identities = 169/225 (75%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || ||||| ||||| ||||| || |||||||| || || ||| || Sbjct 77026 ACGAAGGCGGAGCACGAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTAAGCGT 76967 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || || || ||||||||||| |||||||| || || || || ||||| |||| || Sbjct 76966 GCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGAATGCC 76907 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||| ||||||||||| || || ||||| || || ||||| || || || || || Sbjct 76906 CTCCTTATCCTGGATCTTCTGCTTGACGTTCTCAATAGTGTCCGAAGGCTCGACATCAAG 76847 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||||| || || |||||||| ||||| || || | |||||| || Sbjct 76846 GGTGATGGTTTTGCCCGTGAGGGTCTTAACGAAGATCTGCATCTT 76802 >seq1 Length=1674554 Score = 156 bits (172), Expect = 1e-32 Identities = 154/199 (77%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | ||||| ||||| || |||||||| || |||||||| || || || || Sbjct 772359 ACGAAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGCGT 772300 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || || |||||||||||||| |||||||||||||| || || ||||| || | || Sbjct 772299 GCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATAAGGCGCTGCTGATCAGGGGGGATACC 772240 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 || |||||||||||||| || ||||| || ||||||||||| ||| || || ||||| Sbjct 772239 CTCTTTGTCCTGGATCTTCTGCTTCACATTCTCGATGGTGTCCGAGGGCTCGACATCGAG 772180 Query 211073 AGTGATCGTCTTTCCCGTG 211091 ||||| |||| | | ||| Sbjct 772179 GGTGATAGTCTGTTCGGTG 772161 >seq49 Length=285000 Score = 154 bits (170), Expect = 3e-32 Identities = 165/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | || || ||||| || || ||||| || |||||||| || || || || Sbjct 148336 CGAAGGCGGAGCACGAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTG 148277 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | || || || ||||||||||| |||||||| || || || || || || || | || Sbjct 148276 CGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCGGGGGGGATACCC 148217 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 ||||||||||||||||| || |||||||| ||||||||||| ||| || || ||||| Sbjct 148216 TCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATGGTGTCCGAGGGCTCGACATCGAGG 148157 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTG 211111 ||||| ||||| ||||| || ||||| || || | ||| Sbjct 148156 GTGATGGTCTTGCCCGTAAGGGTCTTGACGAAGATCTG 148119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159147217773530