Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945.
1_202015-01-15] 322 sequences; 39,089,698 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq53 188 2e-42
seq7 170 4e-37
seq1 156 1e-32
seq49 154 3e-32
>seq53
Length=241909
Score = 188 bits (208), Expect = 2e-42
Identities = 173/219 (79%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
|||||| | ||||| ||||| || |||||||| || |||||||| || || || ||
Sbjct 193438 ACGAAGGCGAAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGCGT 193379
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| || || || ||||||||||| |||||||| ||||| || || ||||| |||| ||
Sbjct 193378 GCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCAGGGGGAATACC 193319
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
||||||||||| ||||| || |||||||| ||||||||||| ||| || || |||||
Sbjct 193318 CTCCTTGTCCTGAATCTTCTGCTTCACGTTCTCGATGGTGTCCGAGGGCTCGACATCGAG 193259
Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTG 211111
||||| ||||| |||||||| ||||||||||| | |||
Sbjct 193258 GGTGATGGTCTTACCCGTGAGGGTCTTTACAAAGATCTG 193220
>seq7
Length=852142
Score = 170 bits (188), Expect = 4e-37
Identities = 165/212 (78%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| |||||||| ||||| ||||| || |||||||| || || ||| || | || ||
Sbjct 77472 AGCACAAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTAAGCGTGCGGCCGTCC 77413
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| ||||||||||| |||||||| || || || || ||||| |||| || |||||||||
Sbjct 77412 TCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGAATACCCTCCTTGTCC 77353
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|| ||||| || || ||||| || |||||||| ||| || || |||||||| || |||
Sbjct 77352 TGAATCTTCTGCTTGACGTTCTCAATGGTGTCCGAGGGCTCGACATCGAGAGTAATAGTC 77293
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| || || |||||||| ||||| | ||||||
Sbjct 77292 TTGCCAGTCAGAGTCTTGACAAAGATCTGCAT 77261
Score = 167 bits (184), Expect = 5e-36
Identities = 170/222 (77%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
|||||| | || || ||||| || || ||||| || |||||||| || || ||| ||
Sbjct 77938 ACGAAGGCGGAGCACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTAAGTGT 77879
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| ||||| || ||||||||||| ||||| || || || || || ||||| |||| ||
Sbjct 77878 GCGGCCATCCTCGAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGATCAGGGGGAATACC 77819
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
||||||||||||||||| || || ||||| || || ||||| ||| || || |||||
Sbjct 77818 CTCCTTGTCCTGGATCTTCTGCTTGACGTTCTCAATCGTGTCCGAGGGCTCGACATCGAG 77759
Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||| || ||||| || || |||||||| ||||| | ||||||
Sbjct 77758 AGTAATAGTCTTGCCAGTCAGAGTCTTGACAAAGATCTGCAT 77717
Score = 161 bits (178), Expect = 2e-34
Identities = 169/222 (76%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
|||||| | || || ||||| ||||| ||||| || |||||||| || || ||| ||
Sbjct 77254 ACGAAGGCGGAGCACGAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTAAGCGT 77195
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| || || || ||||||||||| |||||||| || || || || ||||| || | ||
Sbjct 77194 GCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGGATACC 77135
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
||||| ||||| ||||| || || ||||| || |||||||| || || || || ||
Sbjct 77134 CTCCTTATCCTGAATCTTCTGCTTGACGTTCTCAATGGTGTCCGAAGGCTCGACATCAAG 77075
Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||||| ||||| || ||||||||||||||||| | ||||||
Sbjct 77074 GGTGATGGTCTTGCCGGTGAGAGTCTTTACAAAAATCTGCAT 77033
Score = 161 bits (178), Expect = 2e-34
Identities = 163/212 (77%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| |||||||| || |||||||| || |||||||| || || || || | || ||
Sbjct 77700 AGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCC 77641
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| |||||||||||||||||||| || || || || ||||| |||| || ||||| |||
Sbjct 77640 TCGAGCTGCTTGCCTGCGAAGATGAGACGCTGCTGATCAGGGGGAATACCCTCCTTATCC 77581
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| || || ||||| || |||||||| || || || || || ||||| |||
Sbjct 77580 TGGATCTTCTGCTTGACGTTCTCAATGGTGTCCGAAGGCTCGACATCAAGGGTGATGGTC 77521
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| |||||||| ||||| || || | ||||||
Sbjct 77520 TTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 77489
Score = 154 bits (170), Expect = 3e-32
Identities = 169/225 (75%), Gaps = 0/225 (0%)
Strand=Plus/Minus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
|||||| | || || ||||| ||||| ||||| || |||||||| || || ||| ||
Sbjct 77026 ACGAAGGCGGAGCACGAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTAAGCGT 76967
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| || || || ||||||||||| |||||||| || || || || ||||| |||| ||
Sbjct 76966 GCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGAATGCC 76907
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
||||| ||||||||||| || || ||||| || || ||||| || || || || ||
Sbjct 76906 CTCCTTATCCTGGATCTTCTGCTTGACGTTCTCAATAGTGTCCGAAGGCTCGACATCAAG 76847
Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117
||||| || || |||||||| ||||| || || | |||||| ||
Sbjct 76846 GGTGATGGTTTTGCCCGTGAGGGTCTTAACGAAGATCTGCATCTT 76802
>seq1
Length=1674554
Score = 156 bits (172), Expect = 1e-32
Identities = 154/199 (77%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
|||||| | ||||| ||||| || |||||||| || |||||||| || || || ||
Sbjct 772359 ACGAAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGCGT 772300
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| || || |||||||||||||| |||||||||||||| || || ||||| || | ||
Sbjct 772299 GCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATAAGGCGCTGCTGATCAGGGGGGATACC 772240
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
|| |||||||||||||| || ||||| || ||||||||||| ||| || || |||||
Sbjct 772239 CTCTTTGTCCTGGATCTTCTGCTTCACATTCTCGATGGTGTCCGAGGGCTCGACATCGAG 772180
Query 211073 AGTGATCGTCTTTCCCGTG 211091
||||| |||| | | |||
Sbjct 772179 GGTGATAGTCTGTTCGGTG 772161
>seq49
Length=285000
Score = 154 bits (170), Expect = 3e-32
Identities = 165/218 (76%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953
||||| | || || ||||| || || ||||| || |||||||| || || || ||
Sbjct 148336 CGAAGGCGGAGCACGAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTG 148277
Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013
| || || || ||||||||||| |||||||| || || || || || || || | ||
Sbjct 148276 CGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCGGGGGGGATACCC 148217
Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073
||||||||||||||||| || |||||||| ||||||||||| ||| || || |||||
Sbjct 148216 TCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATGGTGTCCGAGGGCTCGACATCGAGG 148157
Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTG 211111
||||| ||||| ||||| || ||||| || || | |||
Sbjct 148156 GTGATGGTCTTGCCCGTAAGGGTCTTGACGAAGATCTG 148119
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159147217773530
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |