Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945.
1_202015-01-15] 322 sequences; 39,089,698 total letters
Query= NC_029996.1
Length=134272
Score E
Sequences producing significant alignments: (Bits) Value
seq7 96.9 3e-15
>seq7
Length=852142
Score = 96.9 bits (106), Expect = 3e-15
Identities = 151/216 (70%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128
||| | ||||| || ||||| ||| || || || || || ||| |||||| || |
Sbjct 77932 GCGGAGCACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTAAGTGTGCGGCC 77873
Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188
|| || ||||| ||||| || || || ||||||||||| || | ||| | | ||| ||
Sbjct 77872 ATCCTCGAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGATCAGGGGGAATACCCTCCTT 77813
Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248
|||| ||| ||||| |||| || | | ||| || | ||| || || | || ||
Sbjct 77812 GTCCTGGATCTTCTGCTTGACGTTCTCAATCGTGTCCGAGGGCTCGACATCGAGAGTAAT 77753
Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
| | || || ||||| || || |||||||| |||||
Sbjct 77752 AGTCTTGCCAGTCAGAGTCTTGACAAAGATCTGCAT 77717
Score = 95.1 bits (104), Expect = 1e-14
Identities = 138/195 (71%), Gaps = 0/195 (0%)
Strand=Plus/Minus
Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152
||| || || || || || ||| ||| || || |||| || ||||| ||||| || ||
Sbjct 76996 CTCCTTCTGGATGTTGTAGTCGCTAAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAA 76937
Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212
|| ||||||||||| || | ||| | || ||| || ||| ||| ||||| |||| |
Sbjct 76936 GATGAGACGCTGCTGATCAGGGGGAATGCCCTCCTTATCCTGGATCTTCTGCTTGACGTT 76877
Query 39213 CGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAAC 39272
| | | || || | ||| || || | ||||| |||| ||||| || || |||||
Sbjct 76876 CTCAATAGTGTCCGAAGGCTCGACATCAAGGGTGATGGTTTTGCCCGTGAGGGTCTTAAC 76817
Query 39273 AAAGATTTGCATCTT 39287
||||| ||||||||
Sbjct 76816 GAAGATCTGCATCTT 76802
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429543914301986
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |