Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945. 1_202015-01-15] 322 sequences; 39,089,698 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq7 113 3e-20 seq53 111 1e-19 >seq7 Length=852142 Score = 113 bits (124), Expect = 3e-20 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| |||||||| ||||||||||| ||||| ||||| || || || || | Sbjct 76802 AAGATGCAGATCTTCGTTAAGACCCTCACGGGCAAAACCATCACCCTTGATGTCGAGCCT 76861 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||||||| |||| | | || || || || || || || || | || || ||| Sbjct 76862 TCGGACACTATTGAGAACGTCAAGCAGAAGATCCAGGATAAGGAGGGCATTCCCCCTGAT 76921 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || |||||| | || || || ||||| || || || |||| ||||| | |||| ||| Sbjct 76922 CAGCAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACGCTTAGCGACTAC 76981 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| || || ||||| || Sbjct 76982 AACATCCAGAAGGAGTCTAC 77001 Score = 107 bits (118), Expect = 1e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||||||||| || || ||||| || || || || | || Sbjct 77489 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTTGATGTCGAGCCTTCG 77548 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || || || || || || || ||| | || || ||||| Sbjct 77549 GACACCATTGAGAACGTCAAGCAGAAGATCCAGGATAAGGAGGGTATTCCCCCTGATCAG 77608 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || || ||||| || || || |||| ||||| | |||| |||||| Sbjct 77609 CAGCGTCTCATCTTCGCAGGCAAGCAGCTCGAGGACGGCCGCACGCTCAGCGACTACAAC 77668 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 77669 ATCCAGAAGGAGTCCAC 77685 Score = 98.7 bits (108), Expect = 7e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || || ||||| || || || ||||| || || || || | || Sbjct 77033 ATGCAGATTTTTGTAAAGACTCTCACCGGCAAGACCATCACCCTTGATGTCGAGCCTTCG 77092 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || || || ||| || || || ||| | || || ||||| Sbjct 77093 GACACCATTGAGAACGTCAAGCAGAAGATTCAGGATAAGGAGGGTATCCCCCCTGATCAG 77152 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || || ||||| || || || |||| ||||| | |||| |||||| Sbjct 77153 CAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACGCTTAGCGACTACAAC 77212 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 77213 ATCCAGAAGGAGTCTAC 77229 >seq53 Length=241909 Score = 111 bits (122), Expect = 1e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 23614 CAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGAC 23673 ||||| || || || ||||||||||| || || ||||| ||||| || || || ||||| Sbjct 193220 CAGATCTTTGTAAAGACCCTCACGGGTAAGACCATCACCCTCGATGTCGAGCCCTCGGAC 193279 Query 23674 ACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAG 23733 || | || | | || || || ||| ||||| || ||| | || || ||||| ||| Sbjct 193280 ACCATCGAGAACGTGAAGCAGAAGATTCAGGACAAGGAGGGTATTCCCCCTGATCAGCAG 193339 Query 23734 CGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATA 23793 || | || || |||||||| || || || |||| ||||| | |||| |||||||| Sbjct 193340 CGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCAGCGACTACAACATC 193399 Query 23794 CAAAAAGAGTCCAC 23807 || || |||||||| Sbjct 193400 CAGAAGGAGTCCAC 193413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338008273523576