Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945.
1_202015-01-15] 322 sequences; 39,089,698 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq53 138 3e-27
seq1 138 3e-27
seq49 134 3e-26
seq7 131 4e-25
seq157 87.8 4e-12
>seq53
Length=241909
Score = 138 bits (152), Expect = 3e-27
Identities = 156/209 (75%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
|||||| | ||||| |||||||| ||||| || || |||| ||||| ||| | ||
Sbjct 193438 ACGAAGGCGAAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGCGT 193379
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| || || || |||||||| || |||||||| || || || || || || ||||||||
Sbjct 193378 GCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCAGGGGGAATACC 193319
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
|||||||| || ||||| |||||||| ||||||||||| |||| || || || |
Sbjct 193318 CTCCTTGTCCTGAATCTTCTGCTTCACGTTCTCGATGGTGTCCGAGGGCTCGACATCGAG 193259
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTA 225700
||||| ||||| ||||| | || ||||
Sbjct 193258 GGTGATGGTCTTACCCGTGAGGGTCTTTA 193230
>seq1
Length=1674554
Score = 138 bits (152), Expect = 3e-27
Identities = 145/191 (76%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
|||||| | ||||| |||||||| ||||| || || |||| ||||| ||| || ||
Sbjct 772359 ACGAAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGCGT 772300
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| || || || |||||||| || ||||||||||| || || || || || || |||||
Sbjct 772299 GCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATAAGGCGCTGCTGATCAGGGGGGATACC 772240
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
|| ||||| |||||||| ||||||||| ||||||||||| |||| || || || |
Sbjct 772239 CTCTTTGTCCTGGATCTTCTGCTTCACATTCTCGATGGTGTCCGAGGGCTCGACATCGAG 772180
Query 225672 CGTGATCGTCT 225682
||||| ||||
Sbjct 772179 GGTGATAGTCT 772169
>seq49
Length=285000
Score = 134 bits (148), Expect = 3e-26
Identities = 148/197 (75%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552
||||| | || || |||||||| || || || || |||| ||||| ||| | ||
Sbjct 148336 CGAAGGCGGAGCACGAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTG 148277
Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612
| || || || |||||||| || |||||||| || || || || ||||| || |||||
Sbjct 148276 CGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCGGGGGGGATACCC 148217
Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672
|||||||| |||||||| |||||||| ||||||||||| |||| || || || |
Sbjct 148216 TCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATGGTGTCCGAGGGCTCGACATCGAGG 148157
Query 225673 GTGATCGTCTTGCCCGT 225689
||||| |||||||||||
Sbjct 148156 GTGATGGTCTTGCCCGT 148140
>seq7
Length=852142
Score = 131 bits (144), Expect = 4e-25
Identities = 147/197 (75%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|| |||||||||||||| || || || |||| ||||| ||| | || | || ||
Sbjct 77472 AGCACAAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTAAGCGTGCGGCCGTCC 77413
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| ||||||||||| || || || || || || |||||||| ||||||||
Sbjct 77412 TCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGAATACCCTCCTTGTCC 77353
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|| ||||| ||||| || || |||||||| |||| || || || | || || |||
Sbjct 77352 TGAATCTTCTGCTTGACGTTCTCAATGGTGTCCGAGGGCTCGACATCGAGAGTAATAGTC 77293
Query 225682 TTGCCCGTCAAAGTTTT 225698
||||| |||| ||| ||
Sbjct 77292 TTGCCAGTCAGAGTCTT 77276
Score = 125 bits (138), Expect = 2e-23
Identities = 155/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|| ||||||||||| ||||| || || |||| ||||| ||| | || | || ||
Sbjct 77700 AGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCC 77641
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| || |||||||| || || || || || || |||||||| ||||| ||
Sbjct 77640 TCGAGCTGCTTGCCTGCGAAGATGAGACGCTGCTGATCAGGGGGAATACCCTCCTTATCC 77581
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| ||||| || || |||||||| || | || || || | ||||| |||
Sbjct 77580 TGGATCTTCTGCTTGACGTTCTCAATGGTGTCCGAAGGCTCGACATCAAGGGTGATGGTC 77521
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|||||||| | || || | ||| | |||||
Sbjct 77520 TTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 77489
Score = 122 bits (134), Expect = 2e-22
Identities = 160/222 (72%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
|||||| | || || ||||||||||| || || || |||| ||||| ||| | ||
Sbjct 77254 ACGAAGGCGGAGCACGAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTAAGCGT 77195
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| || || || |||||||| ||||||||||| || || || || || || || |||||
Sbjct 77194 GCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGGATACC 77135
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
||||| || || ||||| ||||| || || |||||||| || | || || || |
Sbjct 77134 CTCCTTATCCTGAATCTTCTGCTTGACGTTCTCAATGGTGTCCGAAGGCTCGACATCAAG 77075
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| |||||||| || | ||| |||| || | |||||
Sbjct 77074 GGTGATGGTCTTGCCGGTGAGAGTCTTTACAAAAATCTGCAT 77033
Score = 118 bits (130), Expect = 3e-21
Identities = 161/225 (72%), Gaps = 0/225 (0%)
Strand=Plus/Minus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
|||||| | || || ||||||||||| || || || |||| ||||| ||| | ||
Sbjct 77026 ACGAAGGCGGAGCACGAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTAAGCGT 76967
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| || || || |||||||| ||||||||||| || || || || || || ||||| ||
Sbjct 76966 GCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGAATGCC 76907
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
||||| || |||||||| ||||| || || || ||||| || | || || || |
Sbjct 76906 CTCCTTATCCTGGATCTTCTGCTTGACGTTCTCAATAGTGTCCGAAGGCTCGACATCAAG 76847
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716
||||| || |||||||| | || || | ||| | ||||| ||
Sbjct 76846 GGTGATGGTTTTGCCCGTGAGGGTCTTAACGAAGATCTGCATCTT 76802
>seq157
Length=6204
Score = 87.8 bits (96), Expect = 4e-12
Identities = 120/168 (71%), Gaps = 0/168 (0%)
Strand=Plus/Plus
Query 371376 ATGCATAGATAAACCAGGTACTCTCATATTAAATATCGTAGTAATAAAGTTTATAGCGCC 371435
|||||| | | ||||| || ||||||||| || || ||||||||||| ||||| ||
Sbjct 3104 ATGCATTGTCATCCCAGGACTTCGCATATTAAAAATAGTTGTAATAAAGTTAATAGCCCC 3163
Query 371436 TAGAAGAGAAGATATACCTGCAAGATGTAAACTAAATATTGCTAAATCGACGGAACCGCC 371495
||||| |||||| || | ||||||| | ||| || || | ||| || || ||
Sbjct 3164 TAGAATAGAAGAAGCCCCAGATAGATGTAGAGCAAAAATAGCAAGATCTACAGACGGCCC 3223
Query 371496 GGAGTGAGCTACAATAGAACTTAACGGCGGGTAAACTGTTCAGCCGGT 371543
||| || | |||||||| || || |||||||| || || |||||
Sbjct 3224 ACTGTGTGCCTCGATAGAACTCAAAGGAGGGTAAACAGTCCACCCGGT 3271
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192526280063468
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |