Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945. 1_202015-01-15] 322 sequences; 39,089,698 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq53 138 3e-27 seq1 138 3e-27 seq49 134 3e-26 seq7 131 4e-25 seq157 87.8 4e-12 >seq53 Length=241909 Score = 138 bits (152), Expect = 3e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | ||||| |||||||| ||||| || || |||| ||||| ||| | || Sbjct 193438 ACGAAGGCGAAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGCGT 193379 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| || |||||||| || || || || || || |||||||| Sbjct 193378 GCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCAGGGGGAATACC 193319 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| || ||||| |||||||| ||||||||||| |||| || || || | Sbjct 193318 CTCCTTGTCCTGAATCTTCTGCTTCACGTTCTCGATGGTGTCCGAGGGCTCGACATCGAG 193259 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTA 225700 ||||| ||||| ||||| | || |||| Sbjct 193258 GGTGATGGTCTTACCCGTGAGGGTCTTTA 193230 >seq1 Length=1674554 Score = 138 bits (152), Expect = 3e-27 Identities = 145/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | ||||| |||||||| ||||| || || |||| ||||| ||| || || Sbjct 772359 ACGAAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGCGT 772300 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| || ||||||||||| || || || || || || ||||| Sbjct 772299 GCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATAAGGCGCTGCTGATCAGGGGGGATACC 772240 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 || ||||| |||||||| ||||||||| ||||||||||| |||| || || || | Sbjct 772239 CTCTTTGTCCTGGATCTTCTGCTTCACATTCTCGATGGTGTCCGAGGGCTCGACATCGAG 772180 Query 225672 CGTGATCGTCT 225682 ||||| |||| Sbjct 772179 GGTGATAGTCT 772169 >seq49 Length=285000 Score = 134 bits (148), Expect = 3e-26 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | || || |||||||| || || || || |||| ||||| ||| | || Sbjct 148336 CGAAGGCGGAGCACGAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTG 148277 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || || || |||||||| || |||||||| || || || || ||||| || ||||| Sbjct 148276 CGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCGGGGGGGATACCC 148217 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| |||||||| |||||||| ||||||||||| |||| || || || | Sbjct 148216 TCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATGGTGTCCGAGGGCTCGACATCGAGG 148157 Query 225673 GTGATCGTCTTGCCCGT 225689 ||||| ||||||||||| Sbjct 148156 GTGATGGTCTTGCCCGT 148140 >seq7 Length=852142 Score = 131 bits (144), Expect = 4e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || |||||||||||||| || || || |||| ||||| ||| | || | || || Sbjct 77472 AGCACAAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTAAGCGTGCGGCCGTCC 77413 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||||||||| || || || || || || |||||||| |||||||| Sbjct 77412 TCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGAATACCCTCCTTGTCC 77353 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||||| || || |||||||| |||| || || || | || || ||| Sbjct 77352 TGAATCTTCTGCTTGACGTTCTCAATGGTGTCCGAGGGCTCGACATCGAGAGTAATAGTC 77293 Query 225682 TTGCCCGTCAAAGTTTT 225698 ||||| |||| ||| || Sbjct 77292 TTGCCAGTCAGAGTCTT 77276 Score = 125 bits (138), Expect = 2e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || ||||||||||| ||||| || || |||| ||||| ||| | || | || || Sbjct 77700 AGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCC 77641 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || || || || || || |||||||| ||||| || Sbjct 77640 TCGAGCTGCTTGCCTGCGAAGATGAGACGCTGCTGATCAGGGGGAATACCCTCCTTATCC 77581 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||||| || || |||||||| || | || || || | ||||| ||| Sbjct 77580 TGGATCTTCTGCTTGACGTTCTCAATGGTGTCCGAAGGCTCGACATCAAGGGTGATGGTC 77521 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||||| | || || | ||| | ||||| Sbjct 77520 TTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 77489 Score = 122 bits (134), Expect = 2e-22 Identities = 160/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || ||||||||||| || || || |||| ||||| ||| | || Sbjct 77254 ACGAAGGCGGAGCACGAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTAAGCGT 77195 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| ||||||||||| || || || || || || || ||||| Sbjct 77194 GCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGGATACC 77135 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||| || || ||||| ||||| || || |||||||| || | || || || | Sbjct 77134 CTCCTTATCCTGAATCTTCTGCTTGACGTTCTCAATGGTGTCCGAAGGCTCGACATCAAG 77075 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||||||| || | ||| |||| || | ||||| Sbjct 77074 GGTGATGGTCTTGCCGGTGAGAGTCTTTACAAAAATCTGCAT 77033 Score = 118 bits (130), Expect = 3e-21 Identities = 161/225 (72%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || ||||||||||| || || || |||| ||||| ||| | || Sbjct 77026 ACGAAGGCGGAGCACGAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTAAGCGT 76967 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| ||||||||||| || || || || || || ||||| || Sbjct 76966 GCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGAATGCC 76907 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||| || |||||||| ||||| || || || ||||| || | || || || | Sbjct 76906 CTCCTTATCCTGGATCTTCTGCTTGACGTTCTCAATAGTGTCCGAAGGCTCGACATCAAG 76847 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| || |||||||| | || || | ||| | ||||| || Sbjct 76846 GGTGATGGTTTTGCCCGTGAGGGTCTTAACGAAGATCTGCATCTT 76802 >seq157 Length=6204 Score = 87.8 bits (96), Expect = 4e-12 Identities = 120/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 371376 ATGCATAGATAAACCAGGTACTCTCATATTAAATATCGTAGTAATAAAGTTTATAGCGCC 371435 |||||| | | ||||| || ||||||||| || || ||||||||||| ||||| || Sbjct 3104 ATGCATTGTCATCCCAGGACTTCGCATATTAAAAATAGTTGTAATAAAGTTAATAGCCCC 3163 Query 371436 TAGAAGAGAAGATATACCTGCAAGATGTAAACTAAATATTGCTAAATCGACGGAACCGCC 371495 ||||| |||||| || | ||||||| | ||| || || | ||| || || || Sbjct 3164 TAGAATAGAAGAAGCCCCAGATAGATGTAGAGCAAAAATAGCAAGATCTACAGACGGCCC 3223 Query 371496 GGAGTGAGCTACAATAGAACTTAACGGCGGGTAAACTGTTCAGCCGGT 371543 ||| || | |||||||| || || |||||||| || || ||||| Sbjct 3224 ACTGTGTGCCTCGATAGAACTCAAAGGAGGGTAAACAGTCCACCCGGT 3271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192526280063468