Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945. 1_202015-01-15] 322 sequences; 39,089,698 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq91 111 1e-19 seq92 87.8 1e-12 >seq91 Length=99162 Score = 111 bits (122), Expect = 1e-19 Identities = 323/498 (65%), Gaps = 12/498 (2%) Strand=Plus/Minus Query 29737 GTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGTCCCCTGA 29796 || |||||| | | |||| ||| |||||||||||||| || || || ||||| || || Sbjct 43025 GTGCGTGAGCAAGGCGTAGGAGGCAATGTTAAAGGGCACGCCAAGACCAATGTCACCAGA 42966 Query 29797 CCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAAAACTG---ACACATGGC 29853 | |||||| | |||||||| ||||| || | | || || ||||| | ||||| Sbjct 42965 ACGCTGGTACATTTGGCACGAAAGCTCGCCCTTGGAAACATAGAACTGAGCAAACATG-- 42908 Query 29854 ATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTTCCAGGCACACACGATGAT 29913 ||||| || ||||| ||||| || || | |||||||| || | | ||| || Sbjct 42907 -TGGCAGGGCGGAAGCGCCATAAGGTGAAAAGCAGCCGGGTTCCACGCCGAGAGGATCAT 42849 Query 29914 GCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGC-AGCTGATCCACCC 29972 ||| | || | |||||| || | || || ||| | | | || ||||| || || | Sbjct 42848 GCGACGATCGTTGGGGTTGGTCTTAATCGTGTGCAC-GAGCTGCGCAAGCTGGTCGACAC 42790 Query 29973 CCATCCCCGAGTAGTCTGNNNNNNNNNNNNNNNNNNNNNNNNCGAAATGCCTCCACTGGA 30032 || | ||||||||||| | || |||| |||||| | Sbjct 42789 CCTTGCCCGAGTAGTCATCGTGCATCGTTGTGTAGTCCGCACCAAAGTGCCGCCACTGAA 42730 Query 30033 ACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAA 30092 | || || || || || ||||| || || || | || || ||| ||||||| | | Sbjct 42729 AACCATAGACGGGGCCGAGGTCGCCTTCCTCTCGGTCTGTGAGGCCGATCTTGTCGAGAT 42670 Query 30093 AGTCTCTGGAACCGTTGGCGTCCCAGATCT--TTACCCCCTTCTCGGAGAGCTCTTTGGA 30150 | || | ||| || ||| | ||||| || | | | |||| | || | || |||| Sbjct 42669 ATTCACGGGACCCATTGCCATCCCAAATGTGGATGTTCTTTTCTTGCAGTG-TC-TTGGC 42612 Query 30151 GTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCT 30210 | | ||| ||| | |||||| || |||||||| ||||| | ||||||||| | Sbjct 42611 GCTCGTGTCGCCTGACATGAACCAAAGAAGCTCCTCGGCGACGCCGCGCCAAAAGACGCG 42552 Query 30211 CTTGGTCGTGAGGAGGGG 30228 ||| |||||||| || || Sbjct 42551 CTTCGTCGTGAGAAGCGG 42534 >seq92 Length=98443 Score = 87.8 bits (96), Expect = 1e-12 Identities = 214/322 (66%), Gaps = 2/322 (1%) Strand=Plus/Minus Query 49830 GTCCAGGCTGTCTACCTCCATGACAGGAGG-AGACTCGTATCTCTCGAGCACGAGCTGGG 49888 ||| ||||| || |||||| |||| || | | ||| | | || ||||| ||||| | Sbjct 83381 GTCGAGGCTTTCAACCTCCCTGACGGGCGCCATGCTCACCTTT-TCCAGCACAAGCTGTG 83323 Query 49889 CTATCCTGTCGCCCCTCTCGACCCGAAAGGCATCACACCCAAAGTTAAACAGTATGACGC 49948 | || | |||||| || |||| | | | || || |||||| || | |||| Sbjct 83322 CGATGCGGTCGCCGACCTTGACCTCGAGGTCCTCCTGAGCATGGTTAAAGAGGACAACGC 83263 Query 49949 CGAGGTTGCCCCTGTAGTCGGGGTCCACCACCCCGGCACCGACGTCTATAAACTTTTTCA 50008 | | |||||| | ||| ||| | || | ||| ||||| || ||||| | ||| ||| Sbjct 83262 CAACGTTGCCGCGGTAATCGCGATCGATCACGCCGGCGCCCACGTCGACGTGCTTCTTCC 83203 Query 50009 GGGCCAGGCCGGACCTGGGAGCCACCCTGCCGTAGAGGCCCGGGGGCATCTTCACGGCAA 50068 || || || || | || ||||| | |||||| |||| | || | || || ||| | Sbjct 83202 ACGCGAGCCCCGAGCGCGGCGCCACGCGCCCGTAGGTGCCCAGAGGGACCTGCATGGCGA 83143 Query 50069 GGTCCGTCTTTACCAGGGCCCTGCCGAAGGAGGGGACCACGACGGGGTGAGCGGCCGCCA 50128 |||||||||| || || || ||||| || |||| || || ||| || || || Sbjct 83142 GGTCCGTCTTGACGAGCCCCTTGCCGGCGGCCGGGATGACCGCGTCGTGCGCCGCGTACA 83083 Query 50129 GGTCGTAACCGGCGGCTCCCGC 50150 ||||| || ||||| |||| Sbjct 83082 GGTCGAGGCCCGCGGCCTCCGC 83061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406161606063292