Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945. 1_202015-01-15] 322 sequences; 39,089,698 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq30 95.1 1e-14 >seq30 Length=443502 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 4548 CACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAAT 4607 || ||||| ||| |||| || ||||| | ||| || || ||||| ||||| || | Sbjct 288367 CAAGCAAAGTCAGTGTGCATGCCCTCGTCGCGGCTGATGAGCTCGTTGGAAAAGGTGAGG 288426 Query 4608 CCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAAT 4667 || ||||| | || | ||| || |||||||| || ||| || || ||||||||||| Sbjct 288427 CCCGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATCGCGCAGAAAGAGCCAGAAAAGAAG 288486 Query 4668 ATGCCTTCTACGGCGGCAAA 4687 |||||||| ||||||||||| Sbjct 288487 ATGCCTTCCACGGCGGCAAA 288506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427047924097226