Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945. 1_202015-01-15] 322 sequences; 39,089,698 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq30 96.9 5e-15 >seq30 Length=443502 Score = 96.9 bits (106), Expect = 5e-15 Identities = 80/98 (82%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 48183 TCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCG 48242 ||||| ||||| ||||| || ||||| || || || || ||||||||||| || || | Sbjct 288409 TCGTTGGAAAAGGTGAGGCCCGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATCGCGCAG 288468 Query 48243 AAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAA 48280 ||||| ||||||||||| |||||||| ||||| ||||| Sbjct 288469 AAAGAGCCAGAAAAGAAGATGCCTTCCACGGCGGCAAA 288506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694666003958080