Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945. 1_202015-01-15] 322 sequences; 39,089,698 total letters Query= NC_031224.1 Length=59443 Score E Sequences producing significant alignments: (Bits) Value seq91 86.0 2e-12 >seq91 Length=99162 Score = 86.0 bits (94), Expect = 2e-12 Identities = 128/179 (72%), Gaps = 2/179 (1%) Strand=Plus/Plus Query 52078 TCTCTGCTTGGAATGTGGGTGATTTGGATGATATGGCGTTGGCTCCCTGCCATACACTAT 52137 |||| || ||||| || || ||| | ||||||| | | |||||||| | | Sbjct 42856 TCTCGGCGTGGAACCCGGCTGCTTTTCACCTTATGGCGCTTCCGCCCTGCCACATGTTTG 42915 Query 52138 TCCAATTCTATGTAGCTGAAGGTAAGCTTTCGTGCCATTTGTATCAGCGGTCTGCCGACA 52197 || |||||||| | | || ||||||||||||| |||| ||||| |||| |||| Sbjct 42916 CTCAGTTCTATGTTTCCAAGGGCGAGCTTTCGTGCCAAATGTACCAGCGTTCTGGTGACA 42975 Query 52198 -TGTTCTTGGGCGTTCCGTTTAACATTGCCAGCTATTCCTTGCTGACGCATCTGATTGC 52255 || |||| ||||| || |||||||||||| ||| ||||||| ||||| || |||| Sbjct 42976 TTGGTCTT-GGCGTGCCCTTTAACATTGCCTCCTACGCCTTGCTCACGCACCTCCTTGC 43033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 190095273120420