Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945.
1_202015-01-15] 322 sequences; 39,089,698 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq7 132 1e-25
seq49 104 5e-17
seq53 98.7 2e-15
>seq7
Length=852142
Score = 132 bits (146), Expect = 1e-25
Identities = 163/220 (74%), Gaps = 2/220 (1%)
Strand=Plus/Minus
Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAA-GTTC 151944
||| | ||| ||||| || ||||||||||| || ||||||||||| ||| |||| || |
Sbjct 77479 GAGGCGGAGCACAAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCG-CTAAGCGTGC 77421
Query 151945 TCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTT 152004
|| || || || || || |||||||| || | |||||| || | | || || |
Sbjct 77420 GGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGAATACCCT 77361
Query 152005 CCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAG 152064
|||| || ||||| || || ||||| |||| | | |||| || ||| || || ||||
Sbjct 77360 CCTTGTCCTGAATCTTCTGCTTGACGTTCTCAATGGTGTCCGAGGGCTCGACATCGAGAG 77301
Query 152065 TAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
||||||| ||||| || |||||||| || |||| ||||||
Sbjct 77300 TAATAGTCTTGCCAGTCAGAGTCTTGACAAAGATCTGCAT 77261
Score = 129 bits (142), Expect = 1e-24
Identities = 164/223 (74%), Gaps = 2/223 (1%)
Strand=Plus/Minus
Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAA-GTTCTCCCAT 151950
||| || || || ||||||||||| || ||||||||||| ||| |||| || | || |
Sbjct 77017 GAGCACGAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCG-CTAAGCGTGCGGCCGT 76959
Query 151951 CTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010
| || || || || |||||||| || | |||||| || | | || || ||||| |
Sbjct 76958 CCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGAATGCCCTCCTTAT 76899
Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070
| || || || || ||||| |||| | |||| ||| ||| || ||||| || || |
Sbjct 76898 CCTGGATCTTCTGCTTGACGTTCTCAATAGTGTCCGAAGGCTCGACATCAAGGGTGATGG 76839
Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTTACCCTT 152113
||||||||||||| ||||| ||||||| |||||| || ||||
Sbjct 76838 TTTTGCCCGTGAGGGTCTTAACGAAGATCTGCATCTTGGCCTT 76796
Score = 127 bits (140), Expect = 5e-24
Identities = 158/214 (74%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAA-GTTCTCCCAT 151950
||| || || || ||||||||||| || ||||||||||| ||| |||| || | || |
Sbjct 77245 GAGCACGAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCG-CTAAGCGTGCGGCCGT 77187
Query 151951 CTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010
| || || || || |||||||| || | |||||| || | | ||| || ||||| |
Sbjct 77186 CCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGGATACCCTCCTTAT 77127
Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070
| ||||| || || ||||| |||| | | |||| ||| ||| || ||||| || || |
Sbjct 77126 CCTGAATCTTCTGCTTGACGTTCTCAATGGTGTCCGAAGGCTCGACATCAAGGGTGATGG 77067
Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
| ||||| ||||||||||| || || | ||||||
Sbjct 77066 TCTTGCCGGTGAGAGTCTTTACAAAAATCTGCAT 77033
Score = 120 bits (132), Expect = 7e-22
Identities = 158/219 (72%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945
||| | ||| ||||| || || || ||||| || ||||||||||| ||| | || |
Sbjct 77707 GAGGCGGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCG 77648
Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005
|| || || || || || |||||||| || | |||||| || | | || || ||
Sbjct 77647 GCCGTCCTCGAGCTGCTTGCCTGCGAAGATGAGACGCTGCTGATCAGGGGGAATACCCTC 77588
Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065
||| || || || || || ||||| |||| | | |||| ||| ||| || ||||| ||
Sbjct 77587 CTTATCCTGGATCTTCTGCTTGACGTTCTCAATGGTGTCCGAAGGCTCGACATCAAGGGT 77528
Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || ||||||||||| ||||| ||||||| ||||||
Sbjct 77527 GATGGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 77489
Score = 113 bits (124), Expect = 1e-19
Identities = 155/214 (72%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAA-GTTCTCCCAT 151950
||| || || || || |||||||| || ||||||||||| ||| |||| || | ||||
Sbjct 77929 GAGCACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCG-CTAAGTGTGCGGCCAT 77871
Query 151951 CTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010
| || || || || ||||| || || | |||||| || | | || || ||||| |
Sbjct 77870 CCTCGAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGATCAGGGGGAATACCCTCCTTGT 77811
Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070
| || || || || ||||| |||| | |||| || ||| || || ||||||||||
Sbjct 77810 CCTGGATCTTCTGCTTGACGTTCTCAATCGTGTCCGAGGGCTCGACATCGAGAGTAATAG 77751
Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
| ||||| || |||||||| || |||| ||||||
Sbjct 77750 TCTTGCCAGTCAGAGTCTTGACAAAGATCTGCAT 77717
>seq49
Length=285000
Score = 104 bits (114), Expect = 5e-17
Identities = 149/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951
||| || || || || |||||||| || ||||||||||| ||| | || | || ||
Sbjct 148328 GAGCACGAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTC 148269
Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011
|| || || ||||||||||| || | |||||| || | | ||| || ||||| ||
Sbjct 148268 CTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCGGGGGGGATACCCTCCTTGTC 148209
Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071
|| || || || || || |||| | | |||| || ||| || || || || || ||
Sbjct 148208 CTGGATCTTCTGCTTCACGTTCTCGATGGTGTCCGAGGGCTCGACATCGAGGGTGATGGT 148149
Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTG 152101
|||||||| || ||||| ||||||| |||
Sbjct 148148 CTTGCCCGTAAGGGTCTTGACGAAGATCTG 148119
>seq53
Length=241909
Score = 98.7 bits (108), Expect = 2e-15
Identities = 147/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
||||| || || || || ||||| || ||||||||||| ||| | || | || ||
Sbjct 193428 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCC 193369
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || || ||||||||||| || | |||||| || | | || || ||||| ||
Sbjct 193368 TCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCAGGGGGAATACCCTCCTTGTCC 193309
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072
||||| || || || || |||| | | |||| || ||| || || || || || ||
Sbjct 193308 TGAATCTTCTGCTTCACGTTCTCGATGGTGTCCGAGGGCTCGACATCGAGGGTGATGGTC 193249
Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTG 152101
|| |||||||| ||||| || |||| |||
Sbjct 193248 TTACCCGTGAGGGTCTTTACAAAGATCTG 193220
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153816039768062
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |