Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945. 1_202015-01-15] 322 sequences; 39,089,698 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq7 132 1e-25 seq49 104 5e-17 seq53 98.7 2e-15 >seq7 Length=852142 Score = 132 bits (146), Expect = 1e-25 Identities = 163/220 (74%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAA-GTTC 151944 ||| | ||| ||||| || ||||||||||| || ||||||||||| ||| |||| || | Sbjct 77479 GAGGCGGAGCACAAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCG-CTAAGCGTGC 77421 Query 151945 TCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTT 152004 || || || || || || |||||||| || | |||||| || | | || || | Sbjct 77420 GGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGAATACCCT 77361 Query 152005 CCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAG 152064 |||| || ||||| || || ||||| |||| | | |||| || ||| || || |||| Sbjct 77360 CCTTGTCCTGAATCTTCTGCTTGACGTTCTCAATGGTGTCCGAGGGCTCGACATCGAGAG 77301 Query 152065 TAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||||| ||||| || |||||||| || |||| |||||| Sbjct 77300 TAATAGTCTTGCCAGTCAGAGTCTTGACAAAGATCTGCAT 77261 Score = 129 bits (142), Expect = 1e-24 Identities = 164/223 (74%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAA-GTTCTCCCAT 151950 ||| || || || ||||||||||| || ||||||||||| ||| |||| || | || | Sbjct 77017 GAGCACGAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCG-CTAAGCGTGCGGCCGT 76959 Query 151951 CTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 | || || || || |||||||| || | |||||| || | | || || ||||| | Sbjct 76958 CCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGAATGCCCTCCTTAT 76899 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 | || || || || ||||| |||| | |||| ||| ||| || ||||| || || | Sbjct 76898 CCTGGATCTTCTGCTTGACGTTCTCAATAGTGTCCGAAGGCTCGACATCAAGGGTGATGG 76839 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTTACCCTT 152113 ||||||||||||| ||||| ||||||| |||||| || |||| Sbjct 76838 TTTTGCCCGTGAGGGTCTTAACGAAGATCTGCATCTTGGCCTT 76796 Score = 127 bits (140), Expect = 5e-24 Identities = 158/214 (74%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAA-GTTCTCCCAT 151950 ||| || || || ||||||||||| || ||||||||||| ||| |||| || | || | Sbjct 77245 GAGCACGAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCG-CTAAGCGTGCGGCCGT 77187 Query 151951 CTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 | || || || || |||||||| || | |||||| || | | ||| || ||||| | Sbjct 77186 CCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGGATACCCTCCTTAT 77127 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 | ||||| || || ||||| |||| | | |||| ||| ||| || ||||| || || | Sbjct 77126 CCTGAATCTTCTGCTTGACGTTCTCAATGGTGTCCGAAGGCTCGACATCAAGGGTGATGG 77067 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | ||||| ||||||||||| || || | |||||| Sbjct 77066 TCTTGCCGGTGAGAGTCTTTACAAAAATCTGCAT 77033 Score = 120 bits (132), Expect = 7e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| ||||| || || || ||||| || ||||||||||| ||| | || | Sbjct 77707 GAGGCGGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCG 77648 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 || || || || || || |||||||| || | |||||| || | | || || || Sbjct 77647 GCCGTCCTCGAGCTGCTTGCCTGCGAAGATGAGACGCTGCTGATCAGGGGGAATACCCTC 77588 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || || || || || ||||| |||| | | |||| ||| ||| || ||||| || Sbjct 77587 CTTATCCTGGATCTTCTGCTTGACGTTCTCAATGGTGTCCGAAGGCTCGACATCAAGGGT 77528 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || ||||||||||| ||||| ||||||| |||||| Sbjct 77527 GATGGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 77489 Score = 113 bits (124), Expect = 1e-19 Identities = 155/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAA-GTTCTCCCAT 151950 ||| || || || || |||||||| || ||||||||||| ||| |||| || | |||| Sbjct 77929 GAGCACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCG-CTAAGTGTGCGGCCAT 77871 Query 151951 CTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 | || || || || ||||| || || | |||||| || | | || || ||||| | Sbjct 77870 CCTCGAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGATCAGGGGGAATACCCTCCTTGT 77811 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 | || || || || ||||| |||| | |||| || ||| || || |||||||||| Sbjct 77810 CCTGGATCTTCTGCTTGACGTTCTCAATCGTGTCCGAGGGCTCGACATCGAGAGTAATAG 77751 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | ||||| || |||||||| || |||| |||||| Sbjct 77750 TCTTGCCAGTCAGAGTCTTGACAAAGATCTGCAT 77717 >seq49 Length=285000 Score = 104 bits (114), Expect = 5e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || || || || |||||||| || ||||||||||| ||| | || | || || Sbjct 148328 GAGCACGAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTC 148269 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || || ||||||||||| || | |||||| || | | ||| || ||||| || Sbjct 148268 CTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCGGGGGGGATACCCTCCTTGTC 148209 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 || || || || || || |||| | | |||| || ||| || || || || || || Sbjct 148208 CTGGATCTTCTGCTTCACGTTCTCGATGGTGTCCGAGGGCTCGACATCGAGGGTGATGGT 148149 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTG 152101 |||||||| || ||||| ||||||| ||| Sbjct 148148 CTTGCCCGTAAGGGTCTTGACGAAGATCTG 148119 >seq53 Length=241909 Score = 98.7 bits (108), Expect = 2e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || || || || ||||| || ||||||||||| ||| | || | || || Sbjct 193428 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCC 193369 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||||||||| || | |||||| || | | || || ||||| || Sbjct 193368 TCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCAGGGGGAATACCCTCCTTGTCC 193309 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| || || || || |||| | | |||| || ||| || || || || || || Sbjct 193308 TGAATCTTCTGCTTCACGTTCTCGATGGTGTCCGAGGGCTCGACATCGAGGGTGATGGTC 193249 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTG 152101 || |||||||| ||||| || |||| ||| Sbjct 193248 TTACCCGTGAGGGTCTTTACAAAGATCTG 193220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153816039768062