Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945. 1_202015-01-15] 322 sequences; 39,089,698 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq53 176 9e-39 seq7 176 9e-39 seq49 158 3e-33 seq1 136 8e-27 >seq53 Length=241909 Score = 176 bits (194), Expect = 9e-39 Identities = 176/226 (78%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| |||||||| ||||| || | ||| || || |||||||||||||| Sbjct 193444 ACCACCACGAAGGCGAAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCT 193385 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||||||||||| ||||| || || || ||||| ||||| | || || || ||| || Sbjct 193384 GAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCAGGGGG 193325 Query 282992 AATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 ||||||||||||||| || ||||| ||||| ||| | ||||| |||||||| | |||| Sbjct 193324 AATACCCTCCTTGTCCTGAATCTTCTGCTTC-ACGTTCTCGATGGTGTCCGAGGGCTCGA 193266 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTG 283096 | ||||| ||||| ||||||||||| | ||||| || || ||||| Sbjct 193265 CATCGAGGGTGATGGTCTTACCCGTGAGGGTCTTTACAAAGATCTG 193220 >seq7 Length=852142 Score = 176 bits (194), Expect = 9e-39 Identities = 178/229 (78%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || ||||| || | ||| || || |||||||||||||| Sbjct 77944 ACCACCACGAAGGCGGAGCACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCGCT 77885 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| |||||||||||||| || || || || || || || | ||| || || ||| || Sbjct 77884 AAGTGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGATCAGGGGG 77825 Query 282992 AATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 ||||||||||||||| |||||||| ||| || ||| | || || |||||||| | |||| Sbjct 77824 AATACCCTCCTTGTCCTGGATCTTCTGC-TTGACGTTCTCAATCGTGTCCGAGGGCTCGA 77766 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | |||||||| || ||||| || |||| |||||| || || |||||||| Sbjct 77765 CATCGAGAGTAATAGTCTTGCCAGTCAGAGTCTTGACAAAGATCTGCAT 77717 Score = 168 bits (186), Expect = 1e-36 Identities = 178/232 (77%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || || || || | || || || |||||||||||||| Sbjct 77032 ACCACCACGAAGGCGGAGCACGAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCT 76973 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 |||||||||||| ||||| || || || || || ||||| | ||| || || ||| || Sbjct 76972 AAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGG 76913 Query 282992 AATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 ||| |||||||| || |||||||| ||||| ||| | || ||||||||||||| |||| Sbjct 76912 AATGCCCTCCTTATCCTGGATCTTCTGCTTG-ACGTTCTCAATAGTGTCCGAAGGCTCGA 76854 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 | || || ||||| || || ||||| | ||||||||||| |||||||| || Sbjct 76853 CATCAAGGGTGATGGTTTTGCCCGTGAGGGTCTTAACGAAGATCTGCATCTT 76802 Score = 167 bits (184), Expect = 5e-36 Identities = 176/229 (77%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || || || || | || || || |||||||||||||| Sbjct 77488 ACCACCACGGAGGCGGAGCACAAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCT 77429 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 |||||||||||| ||||| || || || || || ||||| | ||| || || ||| || Sbjct 77428 AAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGG 77369 Query 282992 AATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 ||||||||||||||| || ||||| ||| || ||| | || || |||||||| | |||| Sbjct 77368 AATACCCTCCTTGTCCTGAATCTTCTGC-TTGACGTTCTCAATGGTGTCCGAGGGCTCGA 77310 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | |||||||| || ||||| || |||| |||||| || || |||||||| Sbjct 77309 CATCGAGAGTAATAGTCTTGCCAGTCAGAGTCTTGACAAAGATCTGCAT 77261 Score = 167 bits (184), Expect = 5e-36 Identities = 176/229 (77%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || || || || | ||| || || |||||||||||||| Sbjct 77716 ACCACCACGGAGGCGGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCT 77657 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||||||||||| ||||| || || || || || ||||| | ||| || || ||| || Sbjct 77656 GAGCGTGCGGCCGTCCTCGAGCTGCTTGCCTGCGAAGATGAGACGCTGCTGATCAGGGGG 77597 Query 282992 AATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 |||||||||||| || |||||||| ||| || ||| | || || |||||||||| |||| Sbjct 77596 AATACCCTCCTTATCCTGGATCTTCTGC-TTGACGTTCTCAATGGTGTCCGAAGGCTCGA 77538 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | || || ||||| ||||| ||||| | ||||| ||||| |||||||| Sbjct 77537 CATCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 77489 Score = 154 bits (170), Expect = 3e-32 Identities = 173/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || || || || | || || || |||||||||||||| Sbjct 77260 ACCACCACGAAGGCGGAGCACGAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCT 77201 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 |||||||||||| ||||| || || || || || ||||| | ||| || || ||| || Sbjct 77200 AAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGG 77141 Query 282992 AATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 ||||||||||| || || ||||| ||| || ||| | || || |||||||||| |||| Sbjct 77140 GATACCCTCCTTATCCTGAATCTTCTGC-TTGACGTTCTCAATGGTGTCCGAAGGCTCGA 77082 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | || || ||||| ||||| || || | |||||| || || |||||||| Sbjct 77081 CATCAAGGGTGATGGTCTTGCCGGTGAGAGTCTTTACAAAAATCTGCAT 77033 >seq49 Length=285000 Score = 158 bits (174), Expect = 3e-33 Identities = 172/226 (76%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| || ||||| || || || || | || || || |||||||||||||| Sbjct 148343 ACCACCGCGAAGGCGGAGCACGAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGCT 148284 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||||||||||| ||||| || || || ||||| ||||| | ||| || || || || Sbjct 148283 GAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCGGGGGG 148224 Query 282992 AATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 |||||||||||||| |||||||| ||| || ||| | ||||| |||||||| | |||| Sbjct 148223 GATACCCTCCTTGTCCTGGATCTTCTGC-TTCACGTTCTCGATGGTGTCCGAGGGCTCGA 148165 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTG 283096 | ||||| ||||| ||||| ||||| | ||||| ||||| ||||| Sbjct 148164 CATCGAGGGTGATGGTCTTGCCCGTAAGGGTCTTGACGAAGATCTG 148119 >seq1 Length=1674554 Score = 136 bits (150), Expect = 8e-27 Identities = 150/197 (76%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| ||||| || ||||| || | ||| || || |||||||||||||| Sbjct 772364 CCACCACGAAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTC 772305 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||| ||||| || || || ||||| ||||| | || || || ||| || Sbjct 772304 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATAAGGCGCTGCTGATCAGGGGGG 772245 Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||||| ||||| |||||||| ||| || || | ||||| |||||||| | ||||| Sbjct 772244 ATACCCTCTTTGTCCTGGATCTTCTGC-TTCACATTCTCGATGGTGTCCGAGGGCTCGAC 772186 Query 283052 TTCGAGAGTGATCGTCT 283068 ||||| ||||| |||| Sbjct 772185 ATCGAGGGTGATAGTCT 772169 Score = 107 bits (118), Expect = 4e-18 Identities = 310/472 (66%), Gaps = 4/472 (1%) Strand=Plus/Minus Query 273597 GGGTTGTAACTCGGAACGTTCGTAGACCAACCGGTGCCAATACCGGAAGAACCATTCACC 273656 |||||||| | |||| || ||| ||||| || ||||||||||| |||||||| | Sbjct 1193059 GGGTTGTAGCAGGGAATGTCCGTGGACCAGCCCGTGCCAATACCTTGCGAACCATTGATG 1193000 Query 273657 AGAATACTCGGGATAATTGGGACATAATATTCGGGCTCAATTTTATCACCATCGTCGTAA 273716 || | | || | | || |||| || | |||||| || | ||||||||| | Sbjct 1192999 AGGACCATGGGCACGACCGGCGCATAGTACTTGGGCTCGATAGACTGACCATCGTCCTCG 1192940 Query 273717 AGGTACTTCAACAAAGCATCATCCGTATCAACGAAAACCTTTCGCGTCTGAGGATTCAGT 273776 ||||| | | | ||||| || ||| ||| | ||| ||||| |||| || Sbjct 1192939 AGGTAGTCGAGGAGCGCATCGTCGTGCTCATGGAAGAGCTTGCGCGTGAGAGGCGCGAGA 1192880 Query 273777 TTCGTGAAAATGTACCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAAC 273836 |||||||||||| | |||| |||| ||||| || || | | | ||| ||||| Sbjct 1192879 CGCGTGAAAATGTAACGGGCAGACGCAGCATCCTTTCCGCCGAGAATGCGCGAGCCAAAT 1192820 Query 273837 TGACC-CTCGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATATT 273895 || || || ||| || ||| ||| ||||||||| || || | || ||||| | Sbjct 1192819 TGGCCGCTGGGGAAG-AGCAGGTTGATGTTGTTGGAGCCAACAAAGGTTTGCGCCATGCT 1192761 Query 273896 CACGATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGATATA 273955 |||| ||| | ||| || || || |||||||| || || |||||| | | || Sbjct 1192760 GACGACCGTCGACGAAAGCGAAACTTCACCGTGGTGGTACGCCGAGTGTTCCGACACGTA 1192701 Query 273956 ACCACTGAACTGAGCAACCTTCACATC-GCTCGTCAAGTTTCGCTTGAATGCGGAATACA 274014 ||| | ||| || ||||| | || | || || || ||||| || || || | Sbjct 1192700 GCCAACAAGCTGGGCGACCTTGATGTCAGAGCG-CAGCTTGCGCTTAAAGCACGAGTAAA 1192642 Query 274015 ACACCTTCCGCTGCGAGGGCTTGAACCCATCAACGACCGATGGAATACTGCG 274066 ||||| || ||||||||||||| ||||| || | ||||| ||||| Sbjct 1192641 GTACCTTGCGTTGCGAGGGCTTGAGGCCATCGACCATGCTGGGAATGCTGCG 1192590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046734881546588