Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945.
1_202015-01-15] 322 sequences; 39,089,698 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq53 176 9e-39
seq7 176 9e-39
seq49 158 3e-33
seq1 136 8e-27
>seq53
Length=241909
Score = 176 bits (194), Expect = 9e-39
Identities = 176/226 (78%), Gaps = 2/226 (1%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| |||||||| ||||| || | ||| || || ||||||||||||||
Sbjct 193444 ACCACCACGAAGGCGAAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCT 193385
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
||||||||||| ||||| || || || ||||| ||||| | || || || ||| ||
Sbjct 193384 GAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCAGGGGG 193325
Query 282992 AATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050
||||||||||||||| || ||||| ||||| ||| | ||||| |||||||| | ||||
Sbjct 193324 AATACCCTCCTTGTCCTGAATCTTCTGCTTC-ACGTTCTCGATGGTGTCCGAGGGCTCGA 193266
Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTG 283096
| ||||| ||||| ||||||||||| | ||||| || || |||||
Sbjct 193265 CATCGAGGGTGATGGTCTTACCCGTGAGGGTCTTTACAAAGATCTG 193220
>seq7
Length=852142
Score = 176 bits (194), Expect = 9e-39
Identities = 178/229 (78%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| ||||| || ||||| || | ||| || || ||||||||||||||
Sbjct 77944 ACCACCACGAAGGCGGAGCACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCGCT 77885
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
||| |||||||||||||| || || || || || || || | ||| || || ||| ||
Sbjct 77884 AAGTGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGATCAGGGGG 77825
Query 282992 AATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050
||||||||||||||| |||||||| ||| || ||| | || || |||||||| | ||||
Sbjct 77824 AATACCCTCCTTGTCCTGGATCTTCTGC-TTGACGTTCTCAATCGTGTCCGAGGGCTCGA 77766
Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
| |||||||| || ||||| || |||| |||||| || || ||||||||
Sbjct 77765 CATCGAGAGTAATAGTCTTGCCAGTCAGAGTCTTGACAAAGATCTGCAT 77717
Score = 168 bits (186), Expect = 1e-36
Identities = 178/232 (77%), Gaps = 2/232 (1%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| ||||| || || || || | || || || ||||||||||||||
Sbjct 77032 ACCACCACGAAGGCGGAGCACGAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCT 76973
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|||||||||||| ||||| || || || || || ||||| | ||| || || ||| ||
Sbjct 76972 AAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGG 76913
Query 282992 AATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050
||| |||||||| || |||||||| ||||| ||| | || ||||||||||||| ||||
Sbjct 76912 AATGCCCTCCTTATCCTGGATCTTCTGCTTG-ACGTTCTCAATAGTGTCCGAAGGCTCGA 76854
Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102
| || || ||||| || || ||||| | ||||||||||| |||||||| ||
Sbjct 76853 CATCAAGGGTGATGGTTTTGCCCGTGAGGGTCTTAACGAAGATCTGCATCTT 76802
Score = 167 bits (184), Expect = 5e-36
Identities = 176/229 (77%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| ||||| || || || || | || || || ||||||||||||||
Sbjct 77488 ACCACCACGGAGGCGGAGCACAAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCT 77429
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|||||||||||| ||||| || || || || || ||||| | ||| || || ||| ||
Sbjct 77428 AAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGG 77369
Query 282992 AATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050
||||||||||||||| || ||||| ||| || ||| | || || |||||||| | ||||
Sbjct 77368 AATACCCTCCTTGTCCTGAATCTTCTGC-TTGACGTTCTCAATGGTGTCCGAGGGCTCGA 77310
Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
| |||||||| || ||||| || |||| |||||| || || ||||||||
Sbjct 77309 CATCGAGAGTAATAGTCTTGCCAGTCAGAGTCTTGACAAAGATCTGCAT 77261
Score = 167 bits (184), Expect = 5e-36
Identities = 176/229 (77%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| ||||| || || || || | ||| || || ||||||||||||||
Sbjct 77716 ACCACCACGGAGGCGGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCT 77657
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
||||||||||| ||||| || || || || || ||||| | ||| || || ||| ||
Sbjct 77656 GAGCGTGCGGCCGTCCTCGAGCTGCTTGCCTGCGAAGATGAGACGCTGCTGATCAGGGGG 77597
Query 282992 AATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050
|||||||||||| || |||||||| ||| || ||| | || || |||||||||| ||||
Sbjct 77596 AATACCCTCCTTATCCTGGATCTTCTGC-TTGACGTTCTCAATGGTGTCCGAAGGCTCGA 77538
Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
| || || ||||| ||||| ||||| | ||||| ||||| ||||||||
Sbjct 77537 CATCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 77489
Score = 154 bits (170), Expect = 3e-32
Identities = 173/229 (76%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| ||||| || || || || | || || || ||||||||||||||
Sbjct 77260 ACCACCACGAAGGCGGAGCACGAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCT 77201
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|||||||||||| ||||| || || || || || ||||| | ||| || || ||| ||
Sbjct 77200 AAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGG 77141
Query 282992 AATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050
||||||||||| || || ||||| ||| || ||| | || || |||||||||| ||||
Sbjct 77140 GATACCCTCCTTATCCTGAATCTTCTGC-TTGACGTTCTCAATGGTGTCCGAAGGCTCGA 77082
Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
| || || ||||| ||||| || || | |||||| || || ||||||||
Sbjct 77081 CATCAAGGGTGATGGTCTTGCCGGTGAGAGTCTTTACAAAAATCTGCAT 77033
>seq49
Length=285000
Score = 158 bits (174), Expect = 3e-33
Identities = 172/226 (76%), Gaps = 2/226 (1%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
|||||| || ||||| || || || || | || || || ||||||||||||||
Sbjct 148343 ACCACCGCGAAGGCGGAGCACGAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGCT 148284
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
||||||||||| ||||| || || || ||||| ||||| | ||| || || || ||
Sbjct 148283 GAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCGGGGGG 148224
Query 282992 AATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050
|||||||||||||| |||||||| ||| || ||| | ||||| |||||||| | ||||
Sbjct 148223 GATACCCTCCTTGTCCTGGATCTTCTGC-TTCACGTTCTCGATGGTGTCCGAGGGCTCGA 148165
Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTG 283096
| ||||| ||||| ||||| ||||| | ||||| ||||| |||||
Sbjct 148164 CATCGAGGGTGATGGTCTTGCCCGTAAGGGTCTTGACGAAGATCTG 148119
>seq1
Length=1674554
Score = 136 bits (150), Expect = 8e-27
Identities = 150/197 (76%), Gaps = 2/197 (1%)
Strand=Plus/Minus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
|||||||| ||||| || ||||| || | ||| || || ||||||||||||||
Sbjct 772364 CCACCACGAAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTC 772305
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
||||||||||| ||||| || || || ||||| ||||| | || || || ||| ||
Sbjct 772304 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATAAGGCGCTGCTGATCAGGGGGG 772245
Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|||||||| ||||| |||||||| ||| || || | ||||| |||||||| | |||||
Sbjct 772244 ATACCCTCTTTGTCCTGGATCTTCTGC-TTCACATTCTCGATGGTGTCCGAGGGCTCGAC 772186
Query 283052 TTCGAGAGTGATCGTCT 283068
||||| ||||| ||||
Sbjct 772185 ATCGAGGGTGATAGTCT 772169
Score = 107 bits (118), Expect = 4e-18
Identities = 310/472 (66%), Gaps = 4/472 (1%)
Strand=Plus/Minus
Query 273597 GGGTTGTAACTCGGAACGTTCGTAGACCAACCGGTGCCAATACCGGAAGAACCATTCACC 273656
|||||||| | |||| || ||| ||||| || ||||||||||| |||||||| |
Sbjct 1193059 GGGTTGTAGCAGGGAATGTCCGTGGACCAGCCCGTGCCAATACCTTGCGAACCATTGATG 1193000
Query 273657 AGAATACTCGGGATAATTGGGACATAATATTCGGGCTCAATTTTATCACCATCGTCGTAA 273716
|| | | || | | || |||| || | |||||| || | ||||||||| |
Sbjct 1192999 AGGACCATGGGCACGACCGGCGCATAGTACTTGGGCTCGATAGACTGACCATCGTCCTCG 1192940
Query 273717 AGGTACTTCAACAAAGCATCATCCGTATCAACGAAAACCTTTCGCGTCTGAGGATTCAGT 273776
||||| | | | ||||| || ||| ||| | ||| ||||| |||| ||
Sbjct 1192939 AGGTAGTCGAGGAGCGCATCGTCGTGCTCATGGAAGAGCTTGCGCGTGAGAGGCGCGAGA 1192880
Query 273777 TTCGTGAAAATGTACCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAAC 273836
|||||||||||| | |||| |||| ||||| || || | | | ||| |||||
Sbjct 1192879 CGCGTGAAAATGTAACGGGCAGACGCAGCATCCTTTCCGCCGAGAATGCGCGAGCCAAAT 1192820
Query 273837 TGACC-CTCGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATATT 273895
|| || || ||| || ||| ||| ||||||||| || || | || ||||| |
Sbjct 1192819 TGGCCGCTGGGGAAG-AGCAGGTTGATGTTGTTGGAGCCAACAAAGGTTTGCGCCATGCT 1192761
Query 273896 CACGATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGATATA 273955
|||| ||| | ||| || || || |||||||| || || |||||| | | ||
Sbjct 1192760 GACGACCGTCGACGAAAGCGAAACTTCACCGTGGTGGTACGCCGAGTGTTCCGACACGTA 1192701
Query 273956 ACCACTGAACTGAGCAACCTTCACATC-GCTCGTCAAGTTTCGCTTGAATGCGGAATACA 274014
||| | ||| || ||||| | || | || || || ||||| || || || |
Sbjct 1192700 GCCAACAAGCTGGGCGACCTTGATGTCAGAGCG-CAGCTTGCGCTTAAAGCACGAGTAAA 1192642
Query 274015 ACACCTTCCGCTGCGAGGGCTTGAACCCATCAACGACCGATGGAATACTGCG 274066
||||| || ||||||||||||| ||||| || | ||||| |||||
Sbjct 1192641 GTACCTTGCGTTGCGAGGGCTTGAGGCCATCGACCATGCTGGGAATGCTGCG 1192590
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046734881546588
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