Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945. 1_202015-01-15] 322 sequences; 39,089,698 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq53 145 5e-30 seq49 143 2e-29 seq7 143 2e-29 seq1 107 1e-18 >seq53 Length=241909 Score = 145 bits (160), Expect = 5e-30 Identities = 158/207 (76%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||||||| || ||| |||||| ||||||||||| ||| ||| ||| |||| || Sbjct 193425 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCCTCG 193366 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||| ||||| | ||||||||||| | || | ||| ||||| ||| Sbjct 193365 AGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTGA 193306 Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||||||||||| |||| | |||||||| | || || || || | || || ||||| Sbjct 193305 ATCTTCTGCTTCAC-GTTCTCGATGGTGTCCGAGGGCTCGACATCGAGGGTGATGGTCTT 193247 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTG 44334 |||||||||||||| || ||||| || Sbjct 193246 ACCCGTGAGGGTCTTTACAAAGATCTG 193220 >seq49 Length=285000 Score = 143 bits (158), Expect = 2e-29 Identities = 158/208 (76%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||| ||||| || || |||||| ||||||||||| ||| ||| ||| |||| || Sbjct 148325 CACGAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCCTC 148266 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||||| ||||| ||||| | |||||||||||| | || | ||| ||||| ||| Sbjct 148265 GAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCGGGGGGGATACCCTCCTTGTCCTG 148206 Query 44248 TATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 |||||||||||| | |||| | |||||||| | || || || || | || || |||| Sbjct 148205 GATCTTCTGCTTC-ACGTTCTCGATGGTGTCCGAGGGCTCGACATCGAGGGTGATGGTCT 148147 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTG 44334 | ||||| |||||||| |||||||| || Sbjct 148146 TGCCCGTAAGGGTCTTGACGAAGATCTG 148119 >seq7 Length=852142 Score = 143 bits (158), Expect = 2e-29 Identities = 160/211 (76%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||| ||||| || ||| |||||| ||||||||||| ||| ||| ||| |||| || Sbjct 77698 CACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCCTC 77639 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||||| || || ||||| | |||||||||||| | || | ||| ||||| ||| Sbjct 77638 GAGCTGCTTGCCTGCGAAGATGAGACGCTGCTGATCAGGGGGAATACCCTCCTTATCCTG 77579 Query 44248 TATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||||||||| | |||| | |||||||| | | || || || | || || |||| Sbjct 77578 GATCTTCTGCTTGAC-GTTCTCAATGGTGTCCGAAGGCTCGACATCAAGGGTGATGGTCT 77520 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | |||||||||||||| |||||||| ||||| Sbjct 77519 TGCCCGTGAGGGTCTTGACGAAGATCTGCAT 77489 Score = 125 bits (138), Expect = 5e-24 Identities = 156/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||| ||||| || || |||||| ||||||||||| ||| || ||| |||| || Sbjct 77470 CACAAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTAAGCGTGCGGCCGTCCTC 77411 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||||| || || ||||| | |||||||||||| | || | ||| ||||| ||| Sbjct 77410 GAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTG 77351 Query 44248 TATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||||||||| | |||| | |||||||| | || || || || | ||||| |||| Sbjct 77350 AATCTTCTGCTT-GACGTTCTCAATGGTGTCCGAGGGCTCGACATCGAGAGTAATAGTCT 77292 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || || || ||||| || ||||| ||||| Sbjct 77291 TGCCAGTCAGAGTCTTGACAAAGATCTGCAT 77261 Score = 125 bits (138), Expect = 5e-24 Identities = 156/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||||||| ||||| |||||| ||||||||||| ||| ||| ||| | || || Sbjct 77926 CACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTAAGTGTGCGGCCATCCTC 77867 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||||| || || || || | |||||||||||| | || | ||| ||||| ||| Sbjct 77866 GAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTG 77807 Query 44248 TATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||||||||| | |||| | || ||||| | || || || || | ||||| |||| Sbjct 77806 GATCTTCTGCTT-GACGTTCTCAATCGTGTCCGAGGGCTCGACATCGAGAGTAATAGTCT 77748 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || || || ||||| || ||||| ||||| Sbjct 77747 TGCCAGTCAGAGTCTTGACAAAGATCTGCAT 77717 Score = 122 bits (134), Expect = 6e-23 Identities = 155/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||| ||||| || || |||||| ||||||||||| ||| || ||| |||| || Sbjct 77014 CACGAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTAAGCGTGCGGCCGTCCTC 76955 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||||| || || ||||| | |||||||||||| | || | || ||||| ||| Sbjct 76954 GAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGAATGCCCTCCTTATCCTG 76895 Query 44248 TATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||||||||| | |||| | || ||||| | | || || || | || || || | Sbjct 76894 GATCTTCTGCTTGAC-GTTCTCAATAGTGTCCGAAGGCTCGACATCAAGGGTGATGGTTT 76836 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | |||||||||||||| |||||||| ||||| Sbjct 76835 TGCCCGTGAGGGTCTTAACGAAGATCTGCAT 76805 Score = 116 bits (128), Expect = 3e-21 Identities = 154/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||| ||||| || || |||||| ||||||||||| ||| || ||| |||| || Sbjct 77242 CACGAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTAAGCGTGCGGCCGTCCTC 77183 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||||| || || ||||| | |||||||||||| | || | ||| ||||| ||| Sbjct 77182 GAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGGATACCCTCCTTATCCTG 77123 Query 44248 TATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||||||||| | |||| | |||||||| | | || || || | || || |||| Sbjct 77122 AATCTTCTGCTT-GACGTTCTCAATGGTGTCCGAAGGCTCGACATCAAGGGTGATGGTCT 77064 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || ||||| ||||| || || || ||||| Sbjct 77063 TGCCGGTGAGAGTCTTTACAAAAATCTGCAT 77033 >seq1 Length=1674554 Score = 107 bits (118), Expect = 1e-18 Identities = 137/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||||||| || ||| |||||| ||||||||||| ||| || ||| |||| ||| Sbjct 772346 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCC 772287 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||| ||||| | ||||||||||| | || | ||| || || ||| Sbjct 772286 AGCTGCTTGCCGGCGAAGATAAGGCGCTGCTGATCAGGGGGGATACCCTCTTTGTCCTGG 772227 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||||||||||| | | |||||||| | || || || || | || || |||| | Sbjct 772226 ATCTTCTGCTTCACATTCTCGATGGTGTCCGAGGGCTCGACATCGAGGGTGATAGTCTGT 772167 Query 44309 CCCGTGAGG 44317 | ||| || Sbjct 772166 TCGGTGGGG 772158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359988987262674