Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945.
1_202015-01-15] 322 sequences; 39,089,698 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq53 145 5e-30
seq49 143 2e-29
seq7 143 2e-29
seq1 107 1e-18
>seq53
Length=241909
Score = 145 bits (160), Expect = 5e-30
Identities = 158/207 (76%), Gaps = 2/207 (1%)
Strand=Plus/Minus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|||||||| || ||| |||||| ||||||||||| ||| ||| ||| |||| ||
Sbjct 193425 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCCTCG 193366
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|||||||| ||||| ||||| | ||||||||||| | || | ||| ||||| |||
Sbjct 193365 AGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTGA 193306
Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307
||||||||||||| |||| | |||||||| | || || || || | || || |||||
Sbjct 193305 ATCTTCTGCTTCAC-GTTCTCGATGGTGTCCGAGGGCTCGACATCGAGGGTGATGGTCTT 193247
Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTG 44334
|||||||||||||| || ||||| ||
Sbjct 193246 ACCCGTGAGGGTCTTTACAAAGATCTG 193220
>seq49
Length=285000
Score = 143 bits (158), Expect = 2e-29
Identities = 158/208 (76%), Gaps = 2/208 (1%)
Strand=Plus/Minus
Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187
||| ||||| || || |||||| ||||||||||| ||| ||| ||| |||| ||
Sbjct 148325 CACGAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCCTC 148266
Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247
|||||||| ||||| ||||| | |||||||||||| | || | ||| ||||| |||
Sbjct 148265 GAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCGGGGGGGATACCCTCCTTGTCCTG 148206
Query 44248 TATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306
|||||||||||| | |||| | |||||||| | || || || || | || || ||||
Sbjct 148205 GATCTTCTGCTTC-ACGTTCTCGATGGTGTCCGAGGGCTCGACATCGAGGGTGATGGTCT 148147
Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTG 44334
| ||||| |||||||| |||||||| ||
Sbjct 148146 TGCCCGTAAGGGTCTTGACGAAGATCTG 148119
>seq7
Length=852142
Score = 143 bits (158), Expect = 2e-29
Identities = 160/211 (76%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187
||| ||||| || ||| |||||| ||||||||||| ||| ||| ||| |||| ||
Sbjct 77698 CACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCCTC 77639
Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247
|||||||| || || ||||| | |||||||||||| | || | ||| ||||| |||
Sbjct 77638 GAGCTGCTTGCCTGCGAAGATGAGACGCTGCTGATCAGGGGGAATACCCTCCTTATCCTG 77579
Query 44248 TATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306
||||||||||| | |||| | |||||||| | | || || || | || || ||||
Sbjct 77578 GATCTTCTGCTTGAC-GTTCTCAATGGTGTCCGAAGGCTCGACATCAAGGGTGATGGTCT 77520
Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
| |||||||||||||| |||||||| |||||
Sbjct 77519 TGCCCGTGAGGGTCTTGACGAAGATCTGCAT 77489
Score = 125 bits (138), Expect = 5e-24
Identities = 156/211 (74%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187
||| ||||| || || |||||| ||||||||||| ||| || ||| |||| ||
Sbjct 77470 CACAAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTAAGCGTGCGGCCGTCCTC 77411
Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247
|||||||| || || ||||| | |||||||||||| | || | ||| ||||| |||
Sbjct 77410 GAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTG 77351
Query 44248 TATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306
||||||||||| | |||| | |||||||| | || || || || | ||||| ||||
Sbjct 77350 AATCTTCTGCTT-GACGTTCTCAATGGTGTCCGAGGGCTCGACATCGAGAGTAATAGTCT 77292
Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
| || || || ||||| || ||||| |||||
Sbjct 77291 TGCCAGTCAGAGTCTTGACAAAGATCTGCAT 77261
Score = 125 bits (138), Expect = 5e-24
Identities = 156/211 (74%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187
||||||||| ||||| |||||| ||||||||||| ||| ||| ||| | || ||
Sbjct 77926 CACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTAAGTGTGCGGCCATCCTC 77867
Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247
|||||||| || || || || | |||||||||||| | || | ||| ||||| |||
Sbjct 77866 GAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTG 77807
Query 44248 TATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306
||||||||||| | |||| | || ||||| | || || || || | ||||| ||||
Sbjct 77806 GATCTTCTGCTT-GACGTTCTCAATCGTGTCCGAGGGCTCGACATCGAGAGTAATAGTCT 77748
Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
| || || || ||||| || ||||| |||||
Sbjct 77747 TGCCAGTCAGAGTCTTGACAAAGATCTGCAT 77717
Score = 122 bits (134), Expect = 6e-23
Identities = 155/211 (73%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187
||| ||||| || || |||||| ||||||||||| ||| || ||| |||| ||
Sbjct 77014 CACGAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTAAGCGTGCGGCCGTCCTC 76955
Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247
|||||||| || || ||||| | |||||||||||| | || | || ||||| |||
Sbjct 76954 GAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGAATGCCCTCCTTATCCTG 76895
Query 44248 TATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306
||||||||||| | |||| | || ||||| | | || || || | || || || |
Sbjct 76894 GATCTTCTGCTTGAC-GTTCTCAATAGTGTCCGAAGGCTCGACATCAAGGGTGATGGTTT 76836
Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
| |||||||||||||| |||||||| |||||
Sbjct 76835 TGCCCGTGAGGGTCTTAACGAAGATCTGCAT 76805
Score = 116 bits (128), Expect = 3e-21
Identities = 154/211 (73%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187
||| ||||| || || |||||| ||||||||||| ||| || ||| |||| ||
Sbjct 77242 CACGAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTAAGCGTGCGGCCGTCCTC 77183
Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247
|||||||| || || ||||| | |||||||||||| | || | ||| ||||| |||
Sbjct 77182 GAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGGATACCCTCCTTATCCTG 77123
Query 44248 TATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306
||||||||||| | |||| | |||||||| | | || || || | || || ||||
Sbjct 77122 AATCTTCTGCTT-GACGTTCTCAATGGTGTCCGAAGGCTCGACATCAAGGGTGATGGTCT 77064
Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
| || ||||| ||||| || || || |||||
Sbjct 77063 TGCCGGTGAGAGTCTTTACAAAAATCTGCAT 77033
>seq1
Length=1674554
Score = 107 bits (118), Expect = 1e-18
Identities = 137/189 (72%), Gaps = 0/189 (0%)
Strand=Plus/Minus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|||||||| || ||| |||||| ||||||||||| ||| || ||| |||| |||
Sbjct 772346 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCC 772287
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|||||||| ||||| ||||| | ||||||||||| | || | ||| || || |||
Sbjct 772286 AGCTGCTTGCCGGCGAAGATAAGGCGCTGCTGATCAGGGGGGATACCCTCTTTGTCCTGG 772227
Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308
||||||||||||| | | |||||||| | || || || || | || || |||| |
Sbjct 772226 ATCTTCTGCTTCACATTCTCGATGGTGTCCGAGGGCTCGACATCGAGGGTGATAGTCTGT 772167
Query 44309 CCCGTGAGG 44317
| ||| ||
Sbjct 772166 TCGGTGGGG 772158
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359988987262674
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |