Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945. 1_202015-01-15] 322 sequences; 39,089,698 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq53 141 2e-28 seq49 141 2e-28 seq7 141 2e-28 seq1 129 1e-24 >seq53 Length=241909 Score = 141 bits (156), Expect = 2e-28 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || ||||| || || || ||||||||||| || || ||| ||| Sbjct 193220 CAGATCTTTGTAAAGACCCTCACGGGTAAGACCATCACCCTCGATGTCGAGCCCTCGGAC 193279 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||||||||| || || |||||||||||||| || || || || || || ||||| Sbjct 193280 ACCATCGAGAACGTGAAGCAGAAGATTCAGGACAAGGAGGGTATTCCCCCTGATCAGCAG 193339 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || |||||||| || || | || || ||| || ||| || Sbjct 193340 CGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCAGCGACTACAACATC 193399 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 193400 CAGAAGGAGTCCACCCTCCACCTGGT 193425 >seq49 Length=285000 Score = 141 bits (156), Expect = 2e-28 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || || || || || ||||||||||| || || ||| ||| Sbjct 148119 CAGATCTTCGTCAAGACCCTTACGGGCAAGACCATCACCCTCGATGTCGAGCCCTCGGAC 148178 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||||||||| || || ||||| |||||||| || || ||||| || || ||||| Sbjct 148179 ACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGTATCCCCCCCGATCAGCAG 148238 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || |||||||| || || | || || ||| || ||| || Sbjct 148239 CGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCAGCGACTACAACATC 148298 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 148299 CAGAAGGAGTCTACCCTCCACCTCGT 148324 >seq7 Length=852142 Score = 141 bits (156), Expect = 2e-28 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || || |||||||| || || || |||||||| || || || || ||| Sbjct 77036 CAGATTTTTGTAAAGACTCTCACCGGCAAGACCATCACCCTTGATGTCGAGCCTTCGGAC 77095 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||||||||| || ||||||||||| || || || ||||| || || ||||| Sbjct 77096 ACCATTGAGAACGTCAAGCAGAAGATTCAGGATAAGGAGGGTATCCCCCCTGATCAGCAG 77155 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || |||||||| || || | || ||| ||| || ||| || Sbjct 77156 CGTCTCATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACGCTTAGCGACTACAACATC 77215 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 77216 CAGAAGGAGTCTACTCTCCACCTCGT 77241 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || ||||| || || || || || || ||||| || || ||| ||| Sbjct 77264 CAGATCTTTGTCAAGACTCTGACTGGCAAGACTATTACTCTCGATGTCGAGCCCTCGGAC 77323 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||||||||| || |||||||||||||| || || || || || || ||||| Sbjct 77324 ACCATTGAGAACGTCAAGCAGAAGATTCAGGACAAGGAGGGTATTCCCCCTGATCAGCAG 77383 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || |||||||| || || | || ||| ||| || ||| || Sbjct 77384 CGTCTCATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACGCTTAGCGACTACAACATC 77443 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || ||||| Sbjct 77444 CAGAAGGAGTCTACTCTCCACCTTGT 77469 Score = 129 bits (142), Expect = 1e-24 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || ||||| |||||||| || || || || ||| Sbjct 76808 CAGATCTTCGTTAAGACCCTCACGGGCAAAACCATCACCCTTGATGTCGAGCCTTCGGAC 76867 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||||||||| || ||||| ||||| || || || || || || || ||||| Sbjct 76868 ACTATTGAGAACGTCAAGCAGAAGATCCAGGATAAGGAGGGCATTCCCCCTGATCAGCAG 76927 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || |||||||| || || | || ||| ||| || ||| || Sbjct 76928 CGTCTCATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACGCTTAGCGACTACAACATC 76987 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 76988 CAGAAGGAGTCTACTCTCCACCTCGT 77013 Score = 129 bits (142), Expect = 1e-24 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || || |||||||| || || || || ||| Sbjct 77492 CAGATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTTGATGTCGAGCCTTCGGAC 77551 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||||||||| || ||||| ||||| || || || || || || || ||||| Sbjct 77552 ACCATTGAGAACGTCAAGCAGAAGATCCAGGATAAGGAGGGTATTCCCCCTGATCAGCAG 77611 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || |||||||| || || | || || ||| || ||| || Sbjct 77612 CGTCTCATCTTCGCAGGCAAGCAGCTCGAGGACGGCCGCACGCTCAGCGACTACAACATC 77671 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || ||||| Sbjct 77672 CAGAAGGAGTCCACCCTCCACCTTGT 77697 Score = 123 bits (136), Expect = 6e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || ||||| || || || || || || ||||| || || ||| ||| Sbjct 77720 CAGATCTTTGTCAAGACTCTGACTGGCAAGACTATTACTCTCGATGTCGAGCCCTCGGAC 77779 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||||||||| || ||||| |||||||| || || || || || || ||||| Sbjct 77780 ACGATTGAGAACGTCAAGCAGAAGATCCAGGACAAGGAGGGTATTCCCCCTGATCAGCAG 77839 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || ||||| || || |||||||| ||||| | || ||| ||| || ||| || Sbjct 77840 CGTCTCATTTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACACTTAGCGACTACAACATC 77899 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 77900 CAGAAGGAGTCTACGCTCCACCTGGT 77925 >seq1 Length=1674554 Score = 129 bits (142), Expect = 1e-24 Identities = 134/176 (76%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 177954 ACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAG 178013 || ||||||||||| || || ||| |||||||||||||| || || || ||||| ||| Sbjct 772171 ACTATCACCCTCGATGTCGAGCCCTCGGACACCATCGAGAATGTGAAGCAGAAGATCCAG 772230 Query 178014 GACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAA 178073 |||||||| || ||||| || || ||||| || |||||||||||||| || ||||| || Sbjct 772231 GACAAAGAGGGTATCCCCCCTGATCAGCAGCGCCTTATCTTCGCCGGCAAGCAGCTGGAG 772290 Query 178074 GATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 || || | || || ||| || ||| |||| || || || || || || || || Sbjct 772291 GACGGCCGCACGCTGAGCGACTACAACATCCAGAAGGAGTCCACCCTCCACCTGGT 772346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203726233856468