Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945.
1_202015-01-15] 322 sequences; 39,089,698 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq53 141 2e-28
seq49 141 2e-28
seq7 141 2e-28
seq1 129 1e-24
>seq53
Length=241909
Score = 141 bits (156), Expect = 2e-28
Identities = 155/206 (75%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || || || || || ||||| || || || ||||||||||| || || ||| |||
Sbjct 193220 CAGATCTTTGTAAAGACCCTCACGGGTAAGACCATCACCCTCGATGTCGAGCCCTCGGAC 193279
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||||||||| || || |||||||||||||| || || || || || || |||||
Sbjct 193280 ACCATCGAGAACGTGAAGCAGAAGATTCAGGACAAGGAGGGTATTCCCCCTGATCAGCAG 193339
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || ||||||||||| || |||||||| || || | || || ||| || ||| ||
Sbjct 193340 CGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCAGCGACTACAACATC 193399
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || || || || || || || ||
Sbjct 193400 CAGAAGGAGTCCACCCTCCACCTGGT 193425
>seq49
Length=285000
Score = 141 bits (156), Expect = 2e-28
Identities = 155/206 (75%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || || || || || || || ||||||||||| || || ||| |||
Sbjct 148119 CAGATCTTCGTCAAGACCCTTACGGGCAAGACCATCACCCTCGATGTCGAGCCCTCGGAC 148178
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||||||||| || || ||||| |||||||| || || ||||| || || |||||
Sbjct 148179 ACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGTATCCCCCCCGATCAGCAG 148238
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || ||||||||||| || |||||||| || || | || || ||| || ||| ||
Sbjct 148239 CGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCAGCGACTACAACATC 148298
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || || || || || || || ||
Sbjct 148299 CAGAAGGAGTCTACCCTCCACCTCGT 148324
>seq7
Length=852142
Score = 141 bits (156), Expect = 2e-28
Identities = 155/206 (75%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| ||||| || || |||||||| || || || |||||||| || || || || |||
Sbjct 77036 CAGATTTTTGTAAAGACTCTCACCGGCAAGACCATCACCCTTGATGTCGAGCCTTCGGAC 77095
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| ||||||||||| || ||||||||||| || || || ||||| || || |||||
Sbjct 77096 ACCATTGAGAACGTCAAGCAGAAGATTCAGGATAAGGAGGGTATCCCCCCTGATCAGCAG 77155
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || |||||||| || || |||||||| || || | || ||| ||| || ||| ||
Sbjct 77156 CGTCTCATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACGCTTAGCGACTACAACATC 77215
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || || || || || || || ||
Sbjct 77216 CAGAAGGAGTCTACTCTCCACCTCGT 77241
Score = 138 bits (152), Expect = 3e-27
Identities = 154/206 (75%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || || || || ||||| || || || || || || ||||| || || ||| |||
Sbjct 77264 CAGATCTTTGTCAAGACTCTGACTGGCAAGACTATTACTCTCGATGTCGAGCCCTCGGAC 77323
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| ||||||||||| || |||||||||||||| || || || || || || |||||
Sbjct 77324 ACCATTGAGAACGTCAAGCAGAAGATTCAGGACAAGGAGGGTATTCCCCCTGATCAGCAG 77383
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || |||||||| || || |||||||| || || | || ||| ||| || ||| ||
Sbjct 77384 CGTCTCATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACGCTTAGCGACTACAACATC 77443
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || || || || || || |||||
Sbjct 77444 CAGAAGGAGTCTACTCTCCACCTTGT 77469
Score = 129 bits (142), Expect = 1e-24
Identities = 152/206 (74%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || || ||||| || ||||| |||||||| || || || || |||
Sbjct 76808 CAGATCTTCGTTAAGACCCTCACGGGCAAAACCATCACCCTTGATGTCGAGCCTTCGGAC 76867
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || ||||||||||| || ||||| ||||| || || || || || || || |||||
Sbjct 76868 ACTATTGAGAACGTCAAGCAGAAGATCCAGGATAAGGAGGGCATTCCCCCTGATCAGCAG 76927
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || |||||||| || || |||||||| || || | || ||| ||| || ||| ||
Sbjct 76928 CGTCTCATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACGCTTAGCGACTACAACATC 76987
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || || || || || || || ||
Sbjct 76988 CAGAAGGAGTCTACTCTCCACCTCGT 77013
Score = 129 bits (142), Expect = 1e-24
Identities = 152/206 (74%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || || ||||| || || || |||||||| || || || || |||
Sbjct 77492 CAGATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTTGATGTCGAGCCTTCGGAC 77551
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| ||||||||||| || ||||| ||||| || || || || || || || |||||
Sbjct 77552 ACCATTGAGAACGTCAAGCAGAAGATCCAGGATAAGGAGGGTATTCCCCCTGATCAGCAG 77611
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || |||||||| || || |||||||| || || | || || ||| || ||| ||
Sbjct 77612 CGTCTCATCTTCGCAGGCAAGCAGCTCGAGGACGGCCGCACGCTCAGCGACTACAACATC 77671
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || || || || || || |||||
Sbjct 77672 CAGAAGGAGTCCACCCTCCACCTTGT 77697
Score = 123 bits (136), Expect = 6e-23
Identities = 151/206 (73%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || || || || ||||| || || || || || || ||||| || || ||| |||
Sbjct 77720 CAGATCTTTGTCAAGACTCTGACTGGCAAGACTATTACTCTCGATGTCGAGCCCTCGGAC 77779
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || ||||||||||| || ||||| |||||||| || || || || || || |||||
Sbjct 77780 ACGATTGAGAACGTCAAGCAGAAGATCCAGGACAAGGAGGGTATTCCCCCTGATCAGCAG 77839
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || || ||||| || || |||||||| ||||| | || ||| ||| || ||| ||
Sbjct 77840 CGTCTCATTTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACACTTAGCGACTACAACATC 77899
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || || || || || || || ||
Sbjct 77900 CAGAAGGAGTCTACGCTCCACCTGGT 77925
>seq1
Length=1674554
Score = 129 bits (142), Expect = 1e-24
Identities = 134/176 (76%), Gaps = 0/176 (0%)
Strand=Plus/Plus
Query 177954 ACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAG 178013
|| ||||||||||| || || ||| |||||||||||||| || || || ||||| |||
Sbjct 772171 ACTATCACCCTCGATGTCGAGCCCTCGGACACCATCGAGAATGTGAAGCAGAAGATCCAG 772230
Query 178014 GACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAA 178073
|||||||| || ||||| || || ||||| || |||||||||||||| || ||||| ||
Sbjct 772231 GACAAAGAGGGTATCCCCCCTGATCAGCAGCGCCTTATCTTCGCCGGCAAGCAGCTGGAG 772290
Query 178074 GATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129
|| || | || || ||| || ||| |||| || || || || || || || ||
Sbjct 772291 GACGGCCGCACGCTGAGCGACTACAACATCCAGAAGGAGTCCACCCTCCACCTGGT 772346
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203726233856468
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |