Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945.
1_202015-01-15] 322 sequences; 39,089,698 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq53 134 1e-26
seq7 127 2e-24
seq49 125 7e-24
seq1 111 1e-19
>seq53
Length=241909
Score = 134 bits (148), Expect = 1e-26
Identities = 164/224 (73%), Gaps = 0/224 (0%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || || || | ||||| || || ||| ||||||||| ||||| |||||| |
Sbjct 193443 CCACCACGAAGGCGAAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTG 193384
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| ||||| |||| |||||||||||||||||||| || |||||||| || || | ||||
Sbjct 193383 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCAGGGGGA 193324
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815
| | |||||||||| || || ||||||| | | ||||| | ||| ||
Sbjct 193323 ATACCCTCCTTGTCCTGAATCTTCTGCTTCACGTTCTCGATGGTGTCCGAGGGCTCGACA 193264
Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTG 41859
|| | || || || |||||||| || |||||||| || |||||
Sbjct 193263 TCGAGGGTGATGGTCTTACCCGTGAGGGTCTTTACAAAGATCTG 193220
>seq7
Length=852142
Score = 127 bits (140), Expect = 2e-24
Identities = 166/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || || || | ||| || || || || ||||||||| ||||| ||||||
Sbjct 77031 CCACCACGAAGGCGGAGCACGAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTA 76972
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| ||||| |||| |||||||||||||| ||||| || || ||||| || || | ||||
Sbjct 76971 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGA 76912
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815
| || |||||| ||| ||| || ||||| | | | |||||| | ||| ||
Sbjct 76911 ATGCCCTCCTTATCCTGGATCTTCTGCTTGACGTTCTCAATAGTGTCCGAAGGCTCGACA 76852
Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865
|| | || || ||||| ||||| || ||||| ||||| |||||||| ||
Sbjct 76851 TCAAGGGTGATGGTTTTGCCCGTGAGGGTCTTAACGAAGATCTGCATCTT 76802
Score = 122 bits (134), Expect = 8e-23
Identities = 167/231 (72%), Gaps = 8/231 (3%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || || || | ||| || || || ||| ||||||||| ||||| |||||| |
Sbjct 77715 CCACCACGGAGGCGGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTG 77656
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| ||||| |||| |||||||||||||| ||||| || || ||||| || || | ||||
Sbjct 77655 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCTGCGAAGATGAGACGCTGCTGATCAGGGGGA 77596
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG-ACACA---GTGTCGCTCGACTC 41811
| | |||||| ||| ||| || ||||| |||| | || ||||| | |||
Sbjct 77595 ATACCCTCCTTATCCTGGATCTTCTGCTT----GACGTTCTCAATGGTGTCCGAAGGCTC 77540
Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| || | || || || || ||||| || ||||| ||||| ||||||||
Sbjct 77539 GACATCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 77489
Score = 118 bits (130), Expect = 1e-21
Identities = 166/231 (72%), Gaps = 8/231 (3%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || || || | |||||| || ||||| ||||||||| ||||| ||||||
Sbjct 77943 CCACCACGAAGGCGGAGCACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTA 77884
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| ||||| | || |||||||||||||| ||||| || || ||||| || || | ||||
Sbjct 77883 AGTGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGATCAGGGGGA 77824
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG-ACACA---GTGTCGCTCGACTC 41811
| | |||||||||| ||| || ||||| |||| | || ||||| | |||
Sbjct 77823 ATACCCTCCTTGTCCTGGATCTTCTGCTT----GACGTTCTCAATCGTGTCCGAGGGCTC 77768
Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| || | || || || || || ||||| ||||| || || ||||||||
Sbjct 77767 GACATCGAGAGTAATAGTCTTGCCAGTCAGAGTCTTGACAAAGATCTGCAT 77717
Score = 109 bits (120), Expect = 5e-19
Identities = 164/231 (71%), Gaps = 8/231 (3%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || || || | ||| || || || || ||||||||| ||||| ||||||
Sbjct 77487 CCACCACGGAGGCGGAGCACAAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTA 77428
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| ||||| |||| |||||||||||||| ||||| || || ||||| || || | ||||
Sbjct 77427 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGA 77368
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG-ACACA---GTGTCGCTCGACTC 41811
| | |||||||||| || || ||||| |||| | || ||||| | |||
Sbjct 77367 ATACCCTCCTTGTCCTGAATCTTCTGCTT----GACGTTCTCAATGGTGTCCGAGGGCTC 77312
Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| || | || || || || || ||||| ||||| || || ||||||||
Sbjct 77311 GACATCGAGAGTAATAGTCTTGCCAGTCAGAGTCTTGACAAAGATCTGCAT 77261
Score = 104 bits (114), Expect = 2e-17
Identities = 163/231 (71%), Gaps = 8/231 (3%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || || || | ||| || || || || ||||||||| ||||| ||||||
Sbjct 77259 CCACCACGAAGGCGGAGCACGAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTA 77200
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| ||||| |||| |||||||||||||| ||||| || || ||||| || || | |||
Sbjct 77199 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGG 77140
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG-ACACA---GTGTCGCTCGACTC 41811
| | |||||| ||| || || ||||| |||| | || ||||| | |||
Sbjct 77139 ATACCCTCCTTATCCTGAATCTTCTGCTT----GACGTTCTCAATGGTGTCCGAAGGCTC 77084
Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| || | || || || || || || || |||||||| |||||||||||
Sbjct 77083 GACATCAAGGGTGATGGTCTTGCCGGTGAGAGTCTTTACAAAAATCTGCAT 77033
>seq49
Length=285000
Score = 125 bits (138), Expect = 7e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 41633 CCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCG 41692
|| || ||||| || || | ||| || || || || ||||||||| ||||| ||||||
Sbjct 148345 CCACCACCGCGAAGGCGGAGCACGAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCG 148286
Query 41693 GAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCG 41752
||| ||||| |||| |||||||||||||||||||| || || ||||| || || | |
Sbjct 148285 CTGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCGGGG 148226
Query 41753 GGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCC 41812
|| | | |||||||||| ||| || ||||||| | | ||||| | |||
Sbjct 148225 GGGATACCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATGGTGTCCGAGGGCTCG 148166
Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTG 41859
|| || | || || || || ||||| || ||||| ||||| |||||
Sbjct 148165 ACATCGAGGGTGATGGTCTTGCCCGTAAGGGTCTTGACGAAGATCTG 148119
>seq1
Length=1674554
Score = 111 bits (122), Expect = 1e-19
Identities = 117/154 (76%), Gaps = 0/154 (0%)
Strand=Plus/Minus
Query 41633 CCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCG 41692
||||| || || || || | ||||| || || ||| ||||||||| ||||| ||||||
Sbjct 772367 CCGCCACCACGAAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG 772308
Query 41693 GAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCG 41752
|| ||||| |||| || ||||||||||||||||| || |||||||| || || | |
Sbjct 772307 CTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATAAGGCGCTGCTGATCAGGG 772248
Query 41753 GGAACGCTCTCCTTGTCCATGATTTTTTGCTTCA 41786
|| | | ||| |||||| ||| || |||||||
Sbjct 772247 GGGATACCCTCTTTGTCCTGGATCTTCTGCTTCA 772214
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462302139226400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |