Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945. 1_202015-01-15] 322 sequences; 39,089,698 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq53 134 1e-26 seq7 127 2e-24 seq49 125 7e-24 seq1 111 1e-19 >seq53 Length=241909 Score = 134 bits (148), Expect = 1e-26 Identities = 164/224 (73%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | ||||| || || ||| ||||||||| ||||| |||||| | Sbjct 193443 CCACCACGAAGGCGAAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTG 193384 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| |||||||||||||||||||| || |||||||| || || | |||| Sbjct 193383 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCAGGGGGA 193324 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | | |||||||||| || || ||||||| | | ||||| | ||| || Sbjct 193323 ATACCCTCCTTGTCCTGAATCTTCTGCTTCACGTTCTCGATGGTGTCCGAGGGCTCGACA 193264 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTG 41859 || | || || || |||||||| || |||||||| || ||||| Sbjct 193263 TCGAGGGTGATGGTCTTACCCGTGAGGGTCTTTACAAAGATCTG 193220 >seq7 Length=852142 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | ||| || || || || ||||||||| ||||| |||||| Sbjct 77031 CCACCACGAAGGCGGAGCACGAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTA 76972 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| |||||||||||||| ||||| || || ||||| || || | |||| Sbjct 76971 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGA 76912 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | || |||||| ||| ||| || ||||| | | | |||||| | ||| || Sbjct 76911 ATGCCCTCCTTATCCTGGATCTTCTGCTTGACGTTCTCAATAGTGTCCGAAGGCTCGACA 76852 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || | || || ||||| ||||| || ||||| ||||| |||||||| || Sbjct 76851 TCAAGGGTGATGGTTTTGCCCGTGAGGGTCTTAACGAAGATCTGCATCTT 76802 Score = 122 bits (134), Expect = 8e-23 Identities = 167/231 (72%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | ||| || || || ||| ||||||||| ||||| |||||| | Sbjct 77715 CCACCACGGAGGCGGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTG 77656 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| |||||||||||||| ||||| || || ||||| || || | |||| Sbjct 77655 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCTGCGAAGATGAGACGCTGCTGATCAGGGGGA 77596 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG-ACACA---GTGTCGCTCGACTC 41811 | | |||||| ||| ||| || ||||| |||| | || ||||| | ||| Sbjct 77595 ATACCCTCCTTATCCTGGATCTTCTGCTT----GACGTTCTCAATGGTGTCCGAAGGCTC 77540 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || | || || || || ||||| || ||||| ||||| |||||||| Sbjct 77539 GACATCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 77489 Score = 118 bits (130), Expect = 1e-21 Identities = 166/231 (72%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | |||||| || ||||| ||||||||| ||||| |||||| Sbjct 77943 CCACCACGAAGGCGGAGCACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTA 77884 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || |||||||||||||| ||||| || || ||||| || || | |||| Sbjct 77883 AGTGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGATCAGGGGGA 77824 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG-ACACA---GTGTCGCTCGACTC 41811 | | |||||||||| ||| || ||||| |||| | || ||||| | ||| Sbjct 77823 ATACCCTCCTTGTCCTGGATCTTCTGCTT----GACGTTCTCAATCGTGTCCGAGGGCTC 77768 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || | || || || || || ||||| ||||| || || |||||||| Sbjct 77767 GACATCGAGAGTAATAGTCTTGCCAGTCAGAGTCTTGACAAAGATCTGCAT 77717 Score = 109 bits (120), Expect = 5e-19 Identities = 164/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | ||| || || || || ||||||||| ||||| |||||| Sbjct 77487 CCACCACGGAGGCGGAGCACAAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTA 77428 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| |||||||||||||| ||||| || || ||||| || || | |||| Sbjct 77427 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGA 77368 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG-ACACA---GTGTCGCTCGACTC 41811 | | |||||||||| || || ||||| |||| | || ||||| | ||| Sbjct 77367 ATACCCTCCTTGTCCTGAATCTTCTGCTT----GACGTTCTCAATGGTGTCCGAGGGCTC 77312 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || | || || || || || ||||| ||||| || || |||||||| Sbjct 77311 GACATCGAGAGTAATAGTCTTGCCAGTCAGAGTCTTGACAAAGATCTGCAT 77261 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | ||| || || || || ||||||||| ||||| |||||| Sbjct 77259 CCACCACGAAGGCGGAGCACGAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTA 77200 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| |||||||||||||| ||||| || || ||||| || || | ||| Sbjct 77199 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGG 77140 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG-ACACA---GTGTCGCTCGACTC 41811 | | |||||| ||| || || ||||| |||| | || ||||| | ||| Sbjct 77139 ATACCCTCCTTATCCTGAATCTTCTGCTT----GACGTTCTCAATGGTGTCCGAAGGCTC 77084 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || | || || || || || || || |||||||| ||||||||||| Sbjct 77083 GACATCAAGGGTGATGGTCTTGCCGGTGAGAGTCTTTACAAAAATCTGCAT 77033 >seq49 Length=285000 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 41633 CCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCG 41692 || || ||||| || || | ||| || || || || ||||||||| ||||| |||||| Sbjct 148345 CCACCACCGCGAAGGCGGAGCACGAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCG 148286 Query 41693 GAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCG 41752 ||| ||||| |||| |||||||||||||||||||| || || ||||| || || | | Sbjct 148285 CTGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCGGGG 148226 Query 41753 GGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCC 41812 || | | |||||||||| ||| || ||||||| | | ||||| | ||| Sbjct 148225 GGGATACCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATGGTGTCCGAGGGCTCG 148166 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTG 41859 || || | || || || || ||||| || ||||| ||||| ||||| Sbjct 148165 ACATCGAGGGTGATGGTCTTGCCCGTAAGGGTCTTGACGAAGATCTG 148119 >seq1 Length=1674554 Score = 111 bits (122), Expect = 1e-19 Identities = 117/154 (76%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 41633 CCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCG 41692 ||||| || || || || | ||||| || || ||| ||||||||| ||||| |||||| Sbjct 772367 CCGCCACCACGAAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG 772308 Query 41693 GAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCG 41752 || ||||| |||| || ||||||||||||||||| || |||||||| || || | | Sbjct 772307 CTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATAAGGCGCTGCTGATCAGGG 772248 Query 41753 GGAACGCTCTCCTTGTCCATGATTTTTTGCTTCA 41786 || | | ||| |||||| ||| || ||||||| Sbjct 772247 GGGATACCCTCTTTGTCCTGGATCTTCTGCTTCA 772214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462302139226400