Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerospora_20graminicola_20[genbank_20GCA_5F001887855.2_202017-04- 05] 26,786 sequences; 299,901,251 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq24131 143 3e-29 >seq24131 Length=32940 Score = 143 bits (158), Expect = 3e-29 Identities = 474/728 (65%), Gaps = 12/728 (2%) Strand=Plus/Minus Query 16688 ACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCCATGAAATCAAAA 16747 || || |||||||||||||| |||||||||| || || || | ||||| |||| || Sbjct 31275 ACACGCTTTTCGAAAAAGTTGGTTTTGCCCTGGAGCGAGATCATGTCCATCCAATCGAAT 31216 Query 16748 GGATTAGTAGC-TGAAAATATTTTAGAGTACCCCAGTTCGGCGATTAATCTATCCGCTAC 16806 || || | || ||| || || || || ||||| | || ||| | || || || Sbjct 31215 GGGTTCTTTGCGTGATAA-ATCTTGGACACACCCAGAGAGTAGAGTAAACGGTCAGCAAC 31157 Query 16807 AAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGTACCGGAAGAGC 16866 ||| || || || |||||||| | || ||||||| || || || || ||||| | Sbjct 31156 AAACTCAATGTACTGGCACATGAGCGCGGAGTTCATGCCGATCAGTTCAACAGGAAGGGA 31097 Query 16867 TTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATA-CTAGCAACTCGTT 16925 || || |||| ||||| || || || || |||||| | ||| | || Sbjct 31096 ATCACGCACAAATTCGTGCTCGATCTTCACAGCCTCACGAATAATCTCGTGCA-CACGGC 31038 Query 16926 CCTCGGACGGTGTATGTTTAAGATGTTTAA--ACATCAGACATGCGAAATCGCAATGTAA 16983 ||| | | | | ||| | | || | |||| |||||||| || || || | Sbjct 31037 TCTCTGGCAGCTT--GTTGACCAGTTTCGAGTACATGAGACATGCAAAGTCTGTGTGCAT 30980 Query 16984 TCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTT 17043 || ||||| | ||||| | || || || || ||| || ||||| || || || Sbjct 30979 ACCTTCGTCACGACTGATTAACTCATTCGAGAAACTCAGTCCAGGCATGAGCCCGCGCTT 30920 Query 17044 CTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAA 17103 || | |||||| || | || || || || || || || || || || || ||||| Sbjct 30919 TTTGAGCCAAAAGATGGAACAAAAAGAACCTGAGAAAAAAATGCCTTCAACTGAGGCAAA 30860 Query 17104 CGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTC 17163 || | | || || ||||||| || | | | ||||||| | |||| | Sbjct 30859 TGCTAACAGGCGCTCCGCGTACGACGATACACGCGGATCACACCATTTCAGTGCCCAGTT 30800 Query 17164 GGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATAATTTCTCTTTTTCCTG 17223 |||||| | || | || || ||||| ||||| || | | | ||| ||| Sbjct 30799 GGCTTTCTTTTTGACACATGAAATGGTTTCGATGGCACGTAAGAGGTGGTTTTTCTCCAT 30740 Query 17224 TAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCAT 17283 | || | ||||||||||| ||||| || ||| | ||||||||| || ||||| || Sbjct 30739 AACATCCTTAATATACGTATCAATGAGCAGCGAGTAAACTTCGGAGTGAATATTCTCAAT 30680 Query 17284 GGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCG 17343 || ||||| || ||||||||||| || ||||| | |||||||||||| | ||| | Sbjct 30679 CGCAATCTGGAAGCCGTAAAAGCAACGAGCTTCAGGTATTTGAACTTCGTTGCTGAA--G 30622 Query 17344 TTC--CGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGC 17401 ||| || || || || ||||| ||||| |||||||| || || || || | || ||| Sbjct 30621 TTCATGGCCAGGTTCTCATTCACAATGCCATCGCTCGCTGCAAAGAAGGCAAGTACATGT 30562 Query 17402 TTAATGAA 17409 || || || Sbjct 30561 TTGATAAA 30554 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517372312794480