Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerospora_20graminicola_20[genbank_20GCA_5F001887855.2_202017-04- 05] 26,786 sequences; 299,901,251 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq24131 138 1e-27 >seq24131 Length=32940 Score = 138 bits (152), Expect = 1e-27 Identities = 308/459 (67%), Gaps = 10/459 (2%) Strand=Plus/Minus Query 16194 ACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAA 16253 |||| ||||| || ||||| || | |||||||| | ||||| | || || || | Sbjct 31007 ACATGAGACATGCAAAGTCTGTGTGCATACCTTCGTCACGACTGATTAACTCATTCGAGA 30948 Query 16254 AAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCG 16313 || | | || ||||| || || || || | ||| || || | | ||| || || | Sbjct 30947 AACTCAGTCCAGGCATGAGCCCGCGCTTTTTGAGCCAAAAGATGGAACAAAAAGAACCTG 30888 Query 16314 AAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAG---CAT 16370 | || || || || ||||| || ||||| || | | || |||||||||| | || Sbjct 30887 AGAAAAAAATGCCTTCAACTGAGGCAAATGCTAACAGGCGCTCCGCGTACGACGATACAC 30828 Query 16371 CTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTT 16430 || || ||||||| || |||| | |||||| | ||| | ||| || |||| Sbjct 30827 GCGGATCACA---CCATTTCAGTGCCCAGTTGGCTTTCTTTTTGACACATGAAATGGTTT 30771 Query 16431 CTATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTA 16490 | ||||| || | | | ||| ||| || ||| | |||||||||||||| || | Sbjct 30770 CGATGGCACGTAAGAGGTGGTTTTTCTCCATAACATCCTTAATATACGTATCAATGAGCA 30711 Query 16491 AACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAG 16550 ||| | ||| ||||| || ||||| || || ||||| || || || ||||| |||| Sbjct 30710 GCGAGTAAACTTCGGAGTGAATATTCTCAATCGCAATCTGGAAGCCGTAAAAGCAACGAG 30651 Query 16551 CCTCCGCTATTTGTACTTCCACGTAAAATCGTTC--CGCCAGGTTCTCATTCACGATACC 16608 | || | |||||| ||||| | || |||| ||||||||||||||||| || || Sbjct 30650 CTTCAGGTATTTGAACTTCGTTGCTGAA--GTTCATGGCCAGGTTCTCATTCACAATGCC 30593 Query 16609 GTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAA 16647 || || || ||||| || || | || || || || || Sbjct 30592 ATCGCTCGCTGCAAAGAAGGCAAGTACATGTTTGATAAA 30554 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511243165673520