Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerospora_20graminicola_20[genbank_20GCA_5F001887855.2_202017-04- 05] 26,786 sequences; 299,901,251 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq15263 197 2e-45 >seq15263 Length=38747 Score = 197 bits (218), Expect = 2e-45 Identities = 732/1129 (65%), Gaps = 20/1129 (2%) Strand=Plus/Plus Query 53448 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 53507 |||| |||||||| ||||||||||| || | || | ||||| ||| |||||||||| Sbjct 34305 AATAGATGGTTTCAAAGATCTTCTTGTTCAATTCCCGCGCTTCGTCGCTCTCAAATGGAT 34364 Query 53508 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 53567 |||| | ||| |||||||| || || | || || || || || || || || | ||| | Sbjct 34365 AATTCATGAGGATAAACGCATCGGCAAGGCCCTGGACCCCGATCCCAATCGGACGATGCC 34424 Query 53568 TCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGA 53627 | |||| || | ||||| | || |||||||| | ||| || | || || | Sbjct 34425 GCATATTGGACGTACGTGCTTCCTTTACGGGGTAATAATTGACATCAATCACCTTGTTTA 34484 Query 53628 GGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGTCCATCTA 53687 |||||| | |||||| ||| || | || ||| |||||| || | || Sbjct 34485 GGTTTCGCGTCACGACTTTGGTCACGTCGTACAATTTTTGAAAATTGAACGCACGGTCGT 34544 Query 53688 TTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCG 53747 ||||| | || || | ||||| || ||||| ||||| || |||| | || Sbjct 34545 CCACAAATTTCGGTAACGCCACCGATGCGAGGTTACACACGGCCACTTCATCGGGCGACG 34604 Query 53748 CATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGAT 53807 || | || | ||| ||| | ||||| | || || || | ||| ||||||| Sbjct 34605 TGTACTCAATCACTTCACAGCACAAGTTACTCGATCGAATCGTGCCGAGATTCTGTTGAT 34664 Query 53808 TACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGG 53867 | ||| || ||| ||||| || || ||||| ||| || || |||||||||| Sbjct 34665 TCGACTTGCGATTCGCCGCGTCCTTGTACAGCATGAACGGCACGCCCGTCTCAATCTGGG 34724 Query 53868 ATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCTCTTTTCTC 53927 || | || || ||| | | || || || | || | | | || Sbjct 34725 CGTCCAAGATGGCAAACCACAATTGTTGGGCTTTCATGGTC--TTCCGCGCGCGTCCATC 34782 Query 53928 TT--TCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATT-GTCCAATCCAG 53984 | ||||| ||| ||||| |||||||||| | ||||| |||| || ||| || | Sbjct 34783 GTGTTCGTACTGTGCGTACAAGTTTTCAAACTCGGCGCCCCAG-CATTCGTACAAACCGG 34841 Query 53985 GACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGA 54044 | ||| | |||||| | || ||||||||| | | | || || |||||||| | Sbjct 34842 GCGCTTCGTTCGGACAGAATAAACTCCACTCTCCATTGGCTTCTACGCGCTTCATAAACA 34901 Query 54045 GATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCC-TGTA 54103 |||||||||||| | || ||| | ||| | | | |||| |||||| || || Sbjct 34902 AATCAGGAATCCACAAGGCATAAAACAAATCACGTGCCCGATGTAACTCGTTGCCGTGGT 34961 Query 54104 TTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTC 54163 || | |||| || | ||| | | | || | ||||||||| |||||||| |||| | Sbjct 34962 TTTTCCGTAAG-TCCAAAAACTCGAGCACGTCGGCATGCCACGGCTCCAAGTAGATGG-C 35019 Query 54164 ATAAC--TCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 54221 | ||| || ||||| || || ||||| | || | || || | |||| | | Sbjct 35020 A-AACGAGCCTTTGCGTTTCCCGCCGCCTTGATCCACATACCGTGCCGTATCATTAAAGA 35078 Query 54222 CTCTCAACATTGGAATAATACCATTGGATGCACCATTGGT-CCCGGAGATATAGCTTCCA 54280 | | |||||| ||||| || ||||| || | || ||||| ||| || || || || Sbjct 35079 CGCGCAACATGGGAATGATCCCATTCGAGGAGCCGTTGGTGCCCCGA-ATGTAACTGTTG 35137 Query 54281 CTGGCACGAATATTA--CTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATG 54338 | || ||||| ||| | | |||| |||||||| || ||| ||||||||| | | Sbjct 35138 GTTGCTCGAATGTTATGCATACTGAT--CCCTATCCCTCCGGCCCATTTAGAGATACAGG 35195 Query 54339 CGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCA-TGTTAAGTAGA 54397 | ||| |||| | |||||| || || || || || |||||| || || ||| |||| Sbjct 35196 CACATTGTTTAAGCGTATCGTAAATCCCTTCAATCGAATCATCTTGCATTGCTAA-TAGA 35254 Query 54398 AAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGC 54457 ||||| |||| |||| | || || ||||| |||||||| || || | ||||| Sbjct 35255 AAACACGAGGACAATTGGGGCCGGGGTGTCCCCGCGTTAAATAACGTTGGCGTCGCGTGG 35314 Query 54458 GTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGA 54517 ||||| | |||| || | || | ||||||||| | || | | | || | | | Sbjct 35315 GTAAAAAACTTTTGCGACATGAGCTCGTACGTCTCTAACGCCGCGGCAATGTTGCTCTTG 35374 Query 54518 TGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGA 54566 ||||| |||| || || ||||| | ||| || || || | ||| |||| Sbjct 35375 TGAATCCCTAACGCCACGCGCATAATCATTTGTTGCGGCCGTTCGACGA 35423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593522807165280