Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerospora_20graminicola_20[genbank_20GCA_5F001887855.2_202017-04- 05] 26,786 sequences; 299,901,251 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq5719 161 1e-34 >seq5719 Length=28269 Score = 161 bits (178), Expect = 1e-34 Identities = 309/449 (69%), Gaps = 5/449 (1%) Strand=Plus/Minus Query 145647 GGGAAAGGGCCGGGGGCTCCTGGTCAGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGTA 145706 ||||| || | || |||| || ||||||| | || |||||||||||||| || || Sbjct 20277 GGGAACGGACGCGGTGCTCGTG-TCAGCTGCTTTTGAAGTGGCTCCACGTGGTTTAGATA 20219 Query 145707 GACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCGGGCTCGAGGCCCGTGAGGTGGGC 145766 || || ||||| || | || || || || || || || | || || || | || || Sbjct 20218 CACATGTGCGTCACCGATAACATGAATAAACTCGCCAGGTTTCAGCCCAGTTACTTGAGC 20159 Query 145767 GACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTC 145826 || | | || ||||| | ||||||||| || || ||||| || || ||||||||||| Sbjct 20158 AACTAAGCGCGTAAGCAGCGCGTAGCTGGCAATATTAAAGGGAACTCCAAGCCCCATGTC 20099 Query 145827 CCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCCACGTAGAACTGGCACAG 145886 | || ||||| |||| || || || | ||| ||| ||||||||||||| ||||| | Sbjct 20098 GGCGGAACGCTGATACATTTGACATGACAACTCACCGTCCGCCACGTAGAATTGGCAAAA 20039 Query 145887 GAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGGGTTCCAGGCGGTGAGGAC 145946 | ||| || || |||| ||||| || | || ||||| |||||||| || | || || Sbjct 20038 CATGTGACAAGGTGGCAACGCCATTTCGTGGAGATCCGCTGGGTTCCAAGCCGAAAGCAC 19979 Query 145947 GAGCCTCCTG-CTCTCGGGGTTCCTCTTGATCTCCCCTATCAGGTCCCTGAGCTGGTCCA 146005 | || | | | || |||||| || || | |||| ||| ||||||||||| Sbjct 19978 AATCCGACGGTCACT-GGGGTTTGAACGGAGCTTGTCAATCACCTCCGCGAGCTGGTCCA 19920 Query 146006 CGCCCTGCCCCCGGTAATCTGTCTTGGA-GTCCACGTACGCGGCCCCGAAGTGCCTCCAC 146064 |||| || || ||||||| | || | | | ||| | ||| || ||||| | ||| Sbjct 19919 CGCCTTGACCAGTATAATCTG-CATGCATATTCGTGTATGTGGCACCAAAGTGACGCCAT 19861 Query 146065 TGGAACCCGTAGACGGGCCCCAGGTCCCC 146093 || || || || || || || || || || Sbjct 19860 TGAAAGCCATATACAGGTCCGAGATCTCC 19832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589879227535440