Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerospora_20graminicola_20[genbank_20GCA_5F001887855.2_202017-04- 05] 26,786 sequences; 299,901,251 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq24131 172 6e-38 seq13324 131 2e-25 seq18532 104 2e-17 >seq24131 Length=32940 Score = 172 bits (190), Expect = 6e-38 Identities = 404/604 (67%), Gaps = 8/604 (1%) Strand=Plus/Plus Query 116591 GAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTAC 116650 ||||| ||| ||| || ||| | || ||||| || | | || |||||| |||||| Sbjct 30401 GAGAATCCCAACCGCTTTGTGCTCTTTCCCATTCAGGAGCACGAAGTGTGGCAGATGTAC 30460 Query 116651 AAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGC 116710 || || || ||||| ||||||||||| | ||||||| |||| || | ||| | Sbjct 30461 AAGAAAGCTGAGGCTTCGTTCTGGACGGCCGAGGAGTTGGATTTGGTACATGACCTTAAG 30520 Query 116711 GACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTC 116770 ||||||| | | | ||||| ||||| || || ||||| || || || ||||| || Sbjct 30521 GACTGGGTGAATCTTACGGACAATGAGCGTCACTTTATCAAACATGTACTTGCCTTCTTT 30580 Query 116771 GCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAG 116830 || || ||||| ||||| || || ||||| |||| | | ||| | || || || Sbjct 30581 GCAGCGAGCGATGGCATTGTGAATGAGAACCTGGCCATGAACTTCAGCAACGAAGTTCAA 30640 Query 116831 GTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAA 116890 | | || || || ||||| |||||||| ||||| || || ||||| | ||||| ||| Sbjct 30641 ATACCTGAAGCTCGTTGCTTTTACGGCTTCCAGATTGCGATTGAGAATATTCACTCCGAA 30700 Query 116891 ATGTATTCGACCCTCATCGACACGTACGT--GCGCTCTT-CGGAGGAGAAGCTCCGTTTG 116947 | || ||| ||||| || ||||| | | | || |||| | || | || | Sbjct 30701 GTTTACTCGCTGCTCATTGATACGTATATTAAGGATGTTATGGAGAAAAACCACC---TC 30757 Query 116948 TTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGG 117007 || |||||||| || || | || |||||| |||| ||| | ||||| ||| ||| Sbjct 30758 TTACGTGCCATCGAAACCATTTCATGTGTCAAAAAGAAAGCCAACTGGGCACTGAAATGG 30817 Query 117008 -ATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGG 117066 | | || | | | | | || ||||||||| | || || || | || || || Sbjct 30818 TGTGATCCGC-GTGTATCGTCGTACGCGGAGCGCCTGTTAGCATTTGCCTCAGTTGAAGG 30876 Query 117067 CGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCC 117126 | | || || || || ||| |||| ||||||||||| || ||||| |||||||| Sbjct 30877 CATTTTTTTCTCAGGTTCTTTTTGTTCCATCTTTTGGCTCAAAAAGCGCGGGCTCATGCC 30936 Query 117127 CGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGC 117186 || |||| |||| || ||| | ||| | ||||| ||| |||| |||||||| Sbjct 30937 TGGACTGAGTTTCTCGAATGAGTTAATCAGTCGTGACGAAGGTATGCACACAGACTTTGC 30996 Query 117187 CTGT 117190 ||| Sbjct 30997 ATGT 31000 >seq13324 Length=6237 Score = 131 bits (144), Expect = 2e-25 Identities = 163/221 (74%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 || |||||| || || || ||||| || |||||||| || ||||| |||| || || | Sbjct 5899 AACAATGCAGATTTTTGTGAAAACACTGACGGGCAAGACAATCACGCTCGATGTGGAGCC 5958 Query 40746 CACCGACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804 |||||| | || |||| | |||| ||| |||| ||||| || || || || | | Sbjct 5959 GTCCGACACGATTGACAACG-TGAAGGCAAAGATTCAAGACAAGGAAGGTATTCCGCCAG 6017 Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864 ||||||| || || |||| || ||||| || || || |||| ||| || || || | Sbjct 6018 ACCAGCAGCGTCTAATCTTTGCTGGCAAGCAACTAGAGGACGGGCGTACGCTTGCTGATT 6077 Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 ||||||||||||||||| | ||||||||| | ||| ||||| Sbjct 6078 ACAACATCCAGAAGGAGTCGACGCTGCATTTGGTGCTGCGC 6118 >seq18532 Length=6745 Score = 104 bits (114), Expect = 2e-17 Identities = 139/191 (73%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| ||||| || || || | |||||||| |||||||| | || || || | || Sbjct 5341 ATGCAGATATTTGTGAAGACCTTGACGGGCAAGACCATCACGTTGGATGTGGAGCCGTCC 5282 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || || | | |||| ||||||| ||||| || || ||||| | ||||| Sbjct 5281 GACACGATTGACAATGTT-AAGGCCAAAATTCAGGACAAGGAAGGAATCCCACCTGACCA 5223 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| || ||||| ||||| || || | ||||| || ||||||||| Sbjct 5222 GCAGCGTCTAATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACACTGGCCGACTACAA 5163 Query 40869 CATCCAGAAGG 40879 |||||| |||| Sbjct 5162 CATCCAAAAGG 5152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515046691731360