Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerospora_20graminicola_20[genbank_20GCA_5F001887855.2_202017-04- 05] 26,786 sequences; 299,901,251 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq15263 170 2e-37 seq13324 111 1e-19 seq18532 102 7e-17 >seq15263 Length=38747 Score = 170 bits (188), Expect = 2e-37 Identities = 337/492 (68%), Gaps = 10/492 (2%) Strand=Plus/Plus Query 132918 CGCAAATAATACATGCCCGTTTTCAGTTTTTTCTCCCACGCGTAAAAGTGTATGCTCGAC 132977 || ||||| |||||||||||||||||| || | ||| ||||||||||| ||| || Sbjct 33692 CGTAAATAGTACATGCCCGTTTTCAGTCCCTTTTTCCATGCGTAAAAGTGCATGGACGTG 33751 Query 132978 ACCACCGAGTAA--GTGGGTTCGGCGACAAATAAATTCAGCGATTGACTCTGATCTATGA 133035 | | ||| || || ||||| | | | || ||||| ||||||||| ||| Sbjct 33752 AGTTT--ACTAATCGTCGGGTCGGCAATATGAATGTTTAGCGACTGACTCTGACAAATGT 33809 Query 133036 AAGGAGCACGGTCGGCGGCCATGTTTATTATACACTTTGATTTGATCTCCCATGCCGTCT 133095 | | |||| ||||| || | | | | |||| ||| || ||||| | |||| Sbjct 33810 ACGCGCCACGATCGGCCGCAAGATCGAGCACGGCCTTTTGTTTAATTTCCCACACTGTCT 33869 Query 133096 TGAAGAGATTCTTGACATGCTGTGGTAT-TTCGTCAATGTTCTGCACGGACCCGTTTTCG 133154 || | | |||||| || | || || || ||| | || || |||||||| ||| Sbjct 33870 TGTACTTTTCCTTGACGTGAGGGGGAATGTTTTTCACTTTT-TGTACGGACCCACCGTCG 33928 Query 133155 GCCAAAATCTTGTTGCGCAATTCCGGAGTGTAAATGTCGAGATCGATTAGCGCTTTGACG 133214 |||||| | |||||||| ||| || || ||| | ||||||| || ||| | || | Sbjct 33929 TGCAAAATTTGGTTGCGCACTTCAGGCGTCCAAAGGCCGAGATCAATGAGCTCATTCATC 33988 Query 133215 AGATACTGGTTGACCACTTGAAACTCGCCGGCGAGAACGCGTCTGAGATATACATTCGAC 133274 | ||| | ||| || | |||||||||||| | ||||| | || | ||| ||| Sbjct 33989 AAATATTTGTTCACAATCGTAAACTCGCCGGCCAAGACGCGCCGATTGTACATATTGGAC 34048 Query 133275 GTGAACGGTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCATG 133334 || ||||||| | ||||| |||||||| || ||||||||||||| || || |||||| Sbjct 34049 GTATACGGTTCAATCGATTCATTGTTGCCAAGAATCTGCGCCGTCGAAGCTGTTGGCATG 34108 Query 133335 TACGCCACCAACAAAGAGTTTCTTACGCCGTACTTGTTTA--TGTTGCACTGCAATTCGT 133392 |||||| | ||| ||||| | | ||||||||| | | |||| || |||| || Sbjct 34109 GGCGCCACGAGCAACGAGTTGCGAATCCCGTACTTGATCACCTGTT--CCTTCAATGTGT 34166 Query 133393 TCCAGTCCCACA 133404 |||| ||||||| Sbjct 34167 TCCAATCCCACA 34178 >seq13324 Length=6237 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | | || |||||| || | || ||||| || || ||||||||||| Sbjct 6131 TACCACCACGAAGGCGCAGCACCAAATGCAGCGTCGACTCCTTCTGGATGTTGTAATCAG 6072 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | || ||| ||||| || || || ||||| |||| ||||||||||| || || | Sbjct 6071 CAAGCGTACGCCCGTCCTCTAGTTGCTTGCCAGCAAAGATTAGACGCTGCTGGTCTGGCG 6012 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || || ||||||||| ||| ||| || || | || | ||||| | ||| | Sbjct 6011 GAATACCTTCCTTGTCTTGAATCTTTGCCTTCACGTTGTCAATCGTGTCGGACGGCTCCA 5952 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | |||| || | || ||||| ||||| ||||| |||||||||||||| Sbjct 5951 CATCGAGCGTGATTGTCTTGCCCGTCAGTGTTTTCACAAAAATCTGCAT 5903 >seq18532 Length=6745 Score = 102 bits (112), Expect = 7e-17 Identities = 136/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610 ||||| |||||||| ||| || ||||| |||||||||||| || ||||| |||| Sbjct 5154 TTTTGGATGTTGTAGTCGGCCAGTGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATT 5213 Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670 ||||||||||| || || || || || |||||||| |||||| ||||| | || Sbjct 5214 AGACGCTGCTGGTCAGGTGGGATTCCTTCCTTGTCCTGAATTTTGGCCTTAACATTGTCA 5273 Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 118730 | ||||| | ||| || || | || | || ||||| |||| || || ||||| Sbjct 5274 ATCGTGTCGGACGGCTCCACATCCAACGTGATGGTCTTGCCCGTCAAGGTCTTCACAAAT 5333 Query 118731 ATCTGCATG 118739 ||||||||| Sbjct 5334 ATCTGCATG 5342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433688774167912