Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerospora_20graminicola_20[genbank_20GCA_5F001887855.2_202017-04- 05] 26,786 sequences; 299,901,251 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq13324 147 2e-30 seq18532 116 4e-21 >seq13324 Length=6237 Score = 147 bits (162), Expect = 2e-30 Identities = 166/220 (75%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| ||||||||||| || |||||| || || ||||||||||| || || ||| || Sbjct 6117 CGCAGCACCAAATGCAGCGTCGACTCCTTCTGGATGTTGTAATCAGCAAGCGTACGCCCG 6058 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || ||||| ||||| ||||| || || || ||||||||||| | ||| | | |||||| Sbjct 6057 TCCTCTAGTTGCTTGCCAGCAAAGATTAGACGCTGCTGGTCTGGCGGAATACCTTCCTTG 5998 Query 43089 TCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 | | ||| | |||| | ||| | | | ||||||| || |||||||||| |||||| Sbjct 5997 T-CTTGAATCTTTGCCTTCACGTTGTCAATCGTGTCGGACGGCTCCACATCGAGCGTGAT 5939 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTT 43187 || |||||||| || || || ||||| || |||||| || Sbjct 5938 TGTCTTGCCCGTCAGTGTTTTCACAAAAATCTGCATTGTT 5899 >seq18532 Length=6745 Score = 116 bits (128), Expect = 4e-21 Identities = 142/191 (74%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 42994 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 43053 ||||||| || ||||| || ||||| || || | || || |||||||| ||||| || | Sbjct 5152 CCTTTTGGATGTTGTAGTCGGCCAGTGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGA 5211 Query 43054 TGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 43113 | || ||||||||||| | || | | ||||||||| ||| |||| | | | | | | Sbjct 5212 TTAGACGCTGCTGGTCAGGTGGGATTCCTTCCTTGTCC-TGAATTTTGGCCTTAACATTG 5270 Query 43114 -CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | ||||||| || |||||||| | ||||||||| |||||||| | ||||| ||| Sbjct 5271 TCAATCGTGTCGGACGGCTCCACATCCAACGTGATGGTCTTGCCCGTCAAGGTCTTCACA 5330 Query 43173 AAGATTTGCAT 43183 || || ||||| Sbjct 5331 AATATCTGCAT 5341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571626141172080