Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerospora_20graminicola_20[genbank_20GCA_5F001887855.2_202017-04- 05] 26,786 sequences; 299,901,251 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq24131 187 2e-42 >seq24131 Length=32940 Score = 187 bits (206), Expect = 2e-42 Identities = 379/560 (68%), Gaps = 2/560 (0%) Strand=Plus/Minus Query 16227 ACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAA 16286 |||| | ||| ||||| || |||| |||||||| | ||| |||||||| || || | Sbjct 31007 ACATGAGACATGCAAAGTCTGTGTGCATACCTTCGTCACGACTGATTAACTCATTCGAGA 30948 Query 16287 ATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAG 16346 | | || || ||||| || || || ||||| | |||||| || | ||| ||||| | Sbjct 30947 AACTCAGTCCAGGCATGAGCCCGCGCTTTTTGAGCCAAAAGATGGAACAAAAAGAACCTG 30888 Query 16347 AAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttt 16406 | || || || |||||||||| ||||||||| | || ||||| |||||| | || Sbjct 30887 AGAAAAAAATGCCTTCAACTGAGGCAAATGCTAACAGGCGCTCCGCGTACGA-CGATACA 30829 Query 16407 tactt-tctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCT 16465 | || |||||| ||||| || ||||| | ||| ||||| ||| | || Sbjct 30828 CGCGGATCACACCATTTCAGTGCCCAGTTGGCTTTCTTTTTGACACATGAAATGGTTTCG 30769 Query 16466 ATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAA 16525 || ||| || | | ||||| || | ||| |||||| ||||| || || | Sbjct 30768 ATGGCACGTAAGAGGTGGTTTTTCTCCATAACATCCTTAATATACGTATCAATGAGCAGC 30709 Query 16526 CTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCT 16585 || | ||| || ||||||||||| || || ||||| || || |||||||| | |||| Sbjct 30708 GAGTAAACTTCGGAGTGAATATTCTCAATCGCAATCTGGAAGCCGTAAAAGCAACGAGCT 30649 Query 16586 TCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCG 16645 || | |||||| ||||| | || | || | ||| || || || || |||||| Sbjct 30648 TCAGGTATTTGAACTTCGTTGCTGAAGTTCATGGCCAGGTTCTCATTCACAATGCCATCG 30589 Query 16646 CTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTTTT 16705 || |||||||| || ||||||| ||||| ||||| | || || || | ||| || Sbjct 30588 CTCGCTGCAAAGAAGGCAAGTACATGTTTGATAAAGTGACGCTCATTGTCCGTAAGATTC 30529 Query 16706 AACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACA 16765 | |||||| || || | | ||||| | ||| || | ||||| || ||||| || Sbjct 30528 ACCCAGTCCTTAAGGTCATGTACCAAATCCAACTCCTCGGCCGTCCAGAACGAAGCCTCA 30469 Query 16766 GCCTTTTTATACATTTTCCA 16785 || || || ||||| | ||| Sbjct 30468 GCTTTCTTGTACATCTGCCA 30449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462357139419600