Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerospora_20graminicola_20[genbank_20GCA_5F001887855.2_202017-04- 05] 26,786 sequences; 299,901,251 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq18532 100 2e-16 seq13324 93.3 3e-14 >seq18532 Length=6745 Score = 100 bits (110), Expect = 2e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 45147 CCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATA 45206 |||| || |||||||||||| |||| ||| | || || || || || || || || | Sbjct 5152 CCTTTTGGATGTTGTAGTCGGCCAGTGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGA 5211 Query 45207 TCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCG 45266 | | ||||| ||||| || || | || ||||||||| |||||| |||||| Sbjct 5212 TTAGACGCTGCTGGTCAGGTGGGATTCCTTCCTTGTCCTGAATTTTGGCCTTAACATTGT 5271 Query 45267 CCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAA 45326 | | |||| |||||| |||| || || ||||||||||||| |||||||||| Sbjct 5272 CAATCGTGTCGGACGGCTCCACATCCAACGTGATGGTCTTGCCCGTCAAGGTCTTCACAA 5331 Query 45327 AGATTTGCATGTTGCCTCAA 45346 | || |||||| ||||| || Sbjct 5332 ATATCTGCATGCTGCCTAAA 5351 >seq13324 Length=6237 Score = 93.3 bits (102), Expect = 3e-14 Identities = 152/215 (71%), Gaps = 3/215 (1%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||| |||||||| ||||||||| |||||||| || || || |||| || Sbjct 6111 ACCAAATGCAGCGTCGACTCCTTCTGGATGTTGTAATCAGCAAGCGTACGCCCGTCCTCT 6052 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 ||||| || || || || || | ||||| ||||| || || | ||| |||||||| | Sbjct 6051 AGTTGCTTGCCAGCAAAGATTAGACGCTGCTGGTCTGGCGGAATACCTTCCTTGTCTTGA 5992 Query 45248 ATTTTTTGCTTAACCGCCGCCACGC-TGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 || ||| ||| || | | || | |||| |||||| || | || || ||||| Sbjct 5991 ATCTTTGCCTTCAC-GTTGTCAATCGTGTCGGACGGCTCCACATCGAGCGTGATTGTCTT 5933 Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCA-TGTTG 45340 ||||||||| || |||||||| || |||| ||||| Sbjct 5932 GCCCGTCAGTGTTTTCACAAAAATCTGCATTGTTG 5898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394946225972506