Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerospora_20graminicola_20[genbank_20GCA_5F001887855.2_202017-04- 05] 26,786 sequences; 299,901,251 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq15263 246 3e-60 seq24131 141 8e-29 seq13324 102 7e-17 seq18532 93.3 4e-14 >seq15263 Length=38747 Score = 246 bits (272), Expect = 3e-60 Identities = 990/1538 (64%), Gaps = 49/1538 (3%) Strand=Plus/Plus Query 22465 AAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTC 22524 ||||||||||| ||||||||| || | ||| || ||||| || ||||||| | ||||| Sbjct 34009 AAACTCGCCGGCCAAGACGCGCCGATTGTACATATTGGACGTATACGGTTCAATCGATTC 34068 Query 22525 ATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTT 22584 |||||| || || ||||| || |||||||| || ||||| ||||||| || | |||||| Sbjct 34069 ATTGTTGCCAAGAATCTGCGCCGTCGAAGCTGTTGGCATGGGCGCCACGAGCAACGAGTT 34128 Query 22585 TCTCAAGCCGTGCTT--TGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATC---G 22639 | | |||| ||| | | | || ||| | | ||| ||||||| | | Sbjct 34129 GCGAATCCCGTACTTGATCACCTGTT--CCTTCAATGTGTTCCAATCCCACAAGCCTGAG 34186 Query 22640 GACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCCT 22699 ||||| ||||| | |||||| ||| | || || | || |||||| ||| |||| Sbjct 34187 GACGGTGTCAC---GCCCCACAAATCAAACTGGAAGATCCCTTTACTCGCAGGGGAGCCT 34243 Query 22700 TCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGC-TCGCCTCCAACGCGCC 22758 | |||| |||||||| || | ||||| || || | || ||||| || | Sbjct 34244 GCAAACGTCTCGTACGGTCCCAGTTCTTTGGCAATCTC-CATCGACGTCTCCATGGCAGC 34302 Query 22759 GTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGACGCTTTCGTACGG 22818 |||| || || || ||||| |||||||||||||| || || |||| || | || Sbjct 34303 AAAATAGATGGTTTCAAAGATCTTCTTGTTCAATTCCCGCGCTTCGTCGCTCTCAAATGG 34362 Query 22819 CATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTT 22878 | ||| | | ||||| || || | ||||| || || || || ||||| || | Sbjct 34363 ATAATTCATGAGGATAAACGCATCGGCAAGGCCCTGGACCCCGATCCCAATCGGACGATG 34422 Query 22879 TTTCAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTT 22938 || ||| ||| ||| || | || || |||| ||| || |||| Sbjct 34423 CCGCATATTGGACGTACGTGCTTCCTTTACGGGGTAATAATTGACATCAATCACCTTGTT 34482 Query 22939 CAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCGA 22998 | ||||| ||||| | ||| || | | ||| | | ||||| || Sbjct 34483 TAGGTTTCGCGTCACGACTTTGGTCACGTCGTACAATTTTTGAAAAT--TGAACGCACGG 34540 Query 22999 TTGTACAACAAACTT-GTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTT 23057 | || | ||||| || | | || || | ||| || || || || |||||||| || || Sbjct 34541 TCGT-CCACAAATTTCGGTAAC-GCCACCGATGCGAGGTTACACACGGCCACTTCATCGG 34598 Query 23058 TGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGC 23117 ||||||||||| | | ||| || | || || | |||||||| | ||| | Sbjct 34599 GCGACGTGTACTCAATCACTTCACAGCACAAGTTACTCGATCGAATCGTGCCGAGATT-C 34657 Query 23118 TCTGGTTGCTT----TTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTC 23173 | |||| || || ||||| || |||||||| |||||| ||||| ||||||| Sbjct 34658 T---GTTGATTCGACTTGCGATTCGCCGCGTCCTTGTACAGCATGAACGGCACGCCCGTC 34714 Query 23174 TCGACCTGCGACTCGATGATCGCTCGCCAC-ATAGTCTGAGCGTGAACACGTCGCACGTA 23232 || | ||| | || | ||| || |||| || || || || | | ||| || Sbjct 34715 TCAATCTGGGCGTCCAAGATGGCAAACCACAATTGT-TGGGCTTTCA-TGGTCTTCCGCG 34772 Query 23233 C-CTGCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGG 23291 | | || || | ||||||| | |||||| ||||| ||||| || | || ||| Sbjct 34773 CGCGTCCATCGTGTTCGTACTGTGCGTACAAGTTTTCAAACTCGGCGCCCCAGCATTCGT 34832 Query 23292 CCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATT---TTCAACGC 23348 || ||||||| || ||||||| | | ||||||| | |||| ||| |||| Sbjct 34833 ACAAACCGGGCGCTTCGTTCGGACAGAATAAACTCCACTCT---CCATTGGCTTCTACGC 34889 Query 23349 GTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCT 23408 | ||||||| | ||| || ||||| | || || |||| || || || || || Sbjct 34890 GCTTCATAAACAAATCAGGAATCCACAAGGCATAAAACAAATCACGTGCCCGATGTAACT 34949 Query 23409 CTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGA 23468 | |||||| ||| || || |||||||| || | |||||| |||||||||||||| | Sbjct 34950 CGTTGCCGTGGTTTTTCCGTAAGTCCAAAAACTCGAGCACGTCGGCATGCCACGGCTCCA 35009 Query 23469 GGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGT 23528 ||| | |||||||| ||| | || |||||| ||||| || || || ||||| | Sbjct 35010 AGTAGATGGCAAACGAGCCTTTGCGTTTCCCGCCGCCTTGATCCACATACCGTGCCGTAT 35069 Query 23529 TGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACAC 23588 || | || | | ||| || | || || || || | |||| || || | Sbjct 35070 CATTAAAGACGCGCAACATGGGAATGATCCCATTCGAGGAGCCGTTGGTGC---CCCGAA 35126 Query 23589 TCGAACCTT---TTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCG 23645 | ||| | ||||||||| ||| || | || ||||| |||||| || |||| | Sbjct 35127 TGTAACTGTTGGTTGCTCGAATGTTATGCATACTGATCCCTATCCCTCCGGCCCATTTAG 35186 Query 23646 ATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCG 23705 | || || |||||||| || || ||||| || || || || || |||| | | Sbjct 35187 AGATACAGGCACATTGTTTAAGCGTATCGTAAATCCCTTCAATCGAATCATCTTGCATTG 35246 Query 23706 CGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGC 23765 | | | |||||||| |||| ||| | ||| || | || || | || || Sbjct 35247 CTAATAGAAAACACGAGGACAATTGGGGCCGGGGTGTCCCCGCGTTAAATAACGTTGGCG 35306 Query 23766 TGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATG- 23824 | ||||| ||||| | | |||||| || | |||||| || | || || ||||| Sbjct 35307 TCGCGTGGGTAAAAAACTTTTGCGACATGAGCTCGTACGTCTCTAACGCCGCGGCAATGT 35366 Query 23825 TCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTG 23884 | |||| ||| || || | || |||||||| ||||| | ||| || | ||||| | Sbjct 35367 TGCTCT-TGTGAATCCCTAACGCCACGCGCATAATCATTTGTTGCGGCCGTTCGAC---G 35422 Query 23885 AC---GCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCA 23941 || || | | || || || |||| | |||||| || || |||||||| Sbjct 35423 ACTTTTCCCTGGACACGAAAGAGGTAGCCCCGTTCGAGCGTTTTGAACCCGAAATAGTCG 35482 Query 23942 TAGTTAAAGTCACGATCGTGCACTATGGCCGAATTCAA 23979 || | || || |||||||||| ||||| || ||||| Sbjct 35483 TACTCGAAATCCCGATCGTGCAAGATGGCGGAGTTCAA 35520 >seq24131 Length=32940 Score = 141 bits (156), Expect = 8e-29 Identities = 617/964 (64%), Gaps = 24/964 (2%) Strand=Plus/Plus Query 57525 GAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTAC 57584 ||||||||| | ||||| | ||||| ||| | | | || | ||| | |||||| Sbjct 30401 GAGAATCCCAACCGCTTTGTGCTCTTTCCCATTCAGGAGCACGAAGTGTGGCAGATGTAC 30460 Query 57585 AAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGC 57644 || || || || || ||||| ||||| | ||| || | || || | || || | Sbjct 30461 AAGAAAGCTGAGGCTTCGTTCTGGACGGCCGAGGAGTTGGATTTGGTACATGACCTTAAG 30520 Query 57645 GATTGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTC 57704 || |||| || | || |||| | | ||||| ||||| || | || || || Sbjct 30521 GACTGGGTGAATCTTACGGACAATGAGCGTCACTTTATCAAACATGTACTTGCCTTCTTT 30580 Query 57705 GCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCA-CAA-GAAGTGC 57762 || || |||||| ||||| || ||||| ||| | | || |||| ||| ||||| | Sbjct 30581 GCAGCGAGCGATGGCATTGTGAATGAGAACCTGGCC--ATGAACTTCAGCAACGAAGTTC 30638 Query 57763 AAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAG 57822 || | | || || | ||||||||||| || || | || ||||| || | || || | Sbjct 30639 AAATACCTGAAGCTCGTTGCTTTTACGGCTTCCAGATTGCGATTGAGAATATTCACTCCG 30698 Query 57823 AAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGACGAGAAACGTAGACTGT 57882 || | || ||||| ||||| |||||||| | ||||| |||||| || | Sbjct 30699 AAGTTTACTCGCTGCTCATTGATACGTATATTAAGGATGTTATGGAGAAAAACCACCTCT 30758 Query 57883 TCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGA 57942 | || |||||||| || | || ||||| || | ||| || | |||||| Sbjct 30759 TACGTGCCATCGAAACCATTTCATGTGTCAAAAAGAAAGCCAACTGGGCACTGAAATGGT 30818 Query 57943 -TAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGT 58001 | | ||| | ||| ||| ||| | || | || || ||| | || ||||| Sbjct 30819 GTGATCCGCGTGTAT-CGTCGTACGCGGAGCGCCTGTTAGCATTTGCCTCAGTTGAAGGC 30877 Query 58002 ATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCC 58061 || || || || || ||| | || |||||| | || || ||||| || ||||| Sbjct 30878 ATTTTTTTCTCAGGTTCTTTTTGTTCCATCTTTTGGCTCAAAAAGCGCGGGCTCATGCCT 30937 Query 58062 GGCCTGACGTTTAGC-AACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGC 58120 || |||| |||| | || ||||| || || ||||| ||| | || || || ||||| Sbjct 30938 GGACTGA-GTTTCTCGAATGAGTTAATCAGTCGTGACGAAGGTATGCACACAGACTTTGC 30996 Query 58121 GTGCCTAATGTACTCTCACATTGTCAATAAACCGACGCGGGATCGCATCTTGGACATTAT 58180 || || |||||||| | | ||||| || | | | | || | || ||||| Sbjct 30997 ATGTCTCATGTACTCGAAACTGGTCAACAAGCTGCCAGAGAGCCGTGTGCACGAGATTAT 31056 Query 58181 CACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCT 58240 ||||| || |||||| | || ||||| || |||| || || | || | Sbjct 31057 TCGTGAGGCTGTGAAGATCGAGCACGAATTTGTGCGTGATTCCCTTCCTGTTGAACTGAT 31116 Query 58241 CGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCT 58300 ||| |||||| | | |||| ||||||||||||||||||| ||| | ||| || Sbjct 31117 CGGCATGAACTCCGCGCTCATGTGCCAGTACATTGAGTTTGTTGCTGACCG---TTTACT 31173 Query 58301 CGAACTGATTGGAGAGCGTCA-----TTACAACACGAAAAATCCGTTTGATTTTATGAAT 58355 | | || ||| | | ||| ||| || | || || || || |||| ||| | Sbjct 31174 CTA-CTCTCTGG-GTGTGTCCAAGATTTATCACGCAAAGAACCCATTCGATTGGATGGAC 31231 Query 58356 CTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGaaaaaaaaGTTAGCGAATATCAAAAA 58415 ||||||||||| ||||||| || |||||||||||||| || | |||||| || Sbjct 31232 ATGATCTCGCTCCAGGGCAAAACCAACTTTTTCGAAAAGCGTGTGGGTGAATATTCGAAG 31291 Query 58416 TACGGCGTGATGAGCGGTAACAAGTTGGAGGACGATATTTTCACTTTGGATGCTGCCTTT 58475 |||||| ||| | | ||| || | | |||||| ||||||||| |||| Sbjct 31292 GCTGGCGTG------GGTGTCGCGGCGGAAGAGCAGGTGTTCACTCTGGATGCTGACTTT 31345 Query 58476 TAAT 58479 |||| Sbjct 31346 TAAT 31349 >seq13324 Length=6237 Score = 102 bits (112), Expect = 7e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||| || || || ||||| ||||| || ||||| |||| || || |||||| Sbjct 5903 ATGCAGATTTTTGTGAAAACACTGACGGGCAAGACAATCACGCTCGATGTGGAGCCGTCC 5962 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | || || || ||| | | |||||||||| | ||||| ||||| Sbjct 5963 GACACGATTGACAACGTGAAGGCAAAGATTCAAG-ACAAGGAAGGTATTCCGCCAGACCA 6021 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||||||||| || |||||||| || | || ||| || | ||||| || Sbjct 6022 GCAGCGTCTAATCTTTGCTGGCAAGCAACTAGAGGACGGGCGTACGCTTGCTGATTACAA 6081 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || || ||||| || ||| |||| || Sbjct 6082 CATCCAGAAGGAGTCGACGCTGCATTTGGTGCT 6114 >seq18532 Length=6745 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||| |||| ||||| || ||||| | || || || ||||| Sbjct 5342 CATGCAGATATTTGTGAAGACCTTGACGGGCAAGACCATCACGTTGGATGTGGAGCCGTC 5283 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| | || | || || | ||| |||||||||||| | || || ||||| Sbjct 5282 CGACACGATTGACAATGTTAAGGCCAAAATTCAGGACAAGGAAGGAATCCCACCTGACCA 5223 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||||||||| || |||||||| ||| | || || Sbjct 5222 GCAGCGTCTAATCTTTGCTGGCAAGCAGCTCGAGGA 5187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445617146265120