Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerospora_20graminicola_20[genbank_20GCA_5F001887855.2_202017-04- 05] 26,786 sequences; 299,901,251 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq5719 113 9e-20 seq15263 95.1 2e-14 >seq5719 Length=28269 Score = 113 bits (124), Expect = 9e-20 Identities = 419/646 (65%), Gaps = 8/646 (1%) Strand=Plus/Plus Query 35137 AGGAGTGAAGAAGGACGATAGAACTGGAACAGGAACTCTATCCATTTTTGGACCCCAAAT 35196 ||||||||| | ||||||||||| || || || || || || |||||| | || || Sbjct 19573 AGGAGTGAAACGTGGTGATAGAACTGGCACGGGGACCCTGTCGATATTTGGAGCACAGAT 19632 Query 35197 GAGGTTCTCTCTTCGAGACGACACTATTCCAGTTCTCACTACCAAGAAAATTTTCTGGAG 35256 | | || | | ||| || | |||| | || || || ||||| | || ||| | Sbjct 19633 GCGATTTAGTTTGCGAAACAATGTGTTTCCGTTGCTGACCACAAAGAAGGTGTTTTGGCG 19692 Query 35257 AGGAGTTGTGGAAGAACTCTCGTGGTTCATCAGGGGCAATACAGACGC-CAAAGAATTGG 35315 || || | ||| ||| | | |||||| || || || | || || || | | Sbjct 19693 CGGTGTAGCGGAGGAATTGTTGTGGTTTATAAGTGGGGACACGAGTGCGCACACGCTACA 19752 Query 35316 CCAAGAAGAAGATACACATCTGGAACGCTAATGGGTCGCGGGAATTTTTGGACAGTAGAG 35375 ||| ||| ||| ||||| ||| | | |||||| ||||| || || ||||||||||||| Sbjct 19753 GCAA-AAGGGGATTCACATTTGGGATGGTAATGGCTCGCGTGAGTTCTTGGACAGTAGAG 19811 Query 35376 GGTTATACGATAGAGCAGAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATT 35435 |||| || | | | |||||| | ||||| ||||| || || ||||||||||| | Sbjct 19812 GGTTGCACTCCCGCGAGGTTGGAGATCTCGGACCTGTATATGGCTTTCAATGGCGTCACT 19871 Query 35436 TTGGTGCTGAATATGATACCTGTTC-TTCCGATTATACTGGAAAGGGTATTGATCAATTG 35494 ||||||| ||| | | | | | | ||||||||||| | || | || || | Sbjct 19872 TTGGTGCCACATA-CACGAATATGCATGCAGATTATACTGGTCAAGGCGTGGACCAGCTC 19930 Query 35495 GCCAATATACTAAAGACCCTGAGAGAAAATCCAGATGATAGAAGGATGATTATGACGGCA 35554 || | | | | | || | ||| || ||| | |||| | | |||| Sbjct 19931 GCGGAGGTGATTGACAAGCTCCGTTCAAACCCCAGTGACCGTCGGATTGTGCTTTCGGCT 19990 Query 35555 TGGAATCCTATGGATCTTCACCTTATGGCTCTTCCTCCATGCCACATGACTGCTCAATTT 35614 ||||| || |||||| ||| ||||| | || || || |||||| | ||||| Sbjct 19991 TGGAACCCAGCGGATCTCCACGAAATGGCGTTGCCACCTTGTCACATGTTTTGCCAATTC 20050 Query 35615 TATGTGGCTAATGGAGAATTGTCGTGCCAGTTGTATCAGCGAAGCGGAGATGTCGGGTTG 35674 || ||||| | || || ||||| || || |||||||||| || || | ||| | Sbjct 20051 TACGTGGCGGACGGTGAGTTGTCATGTCAAATGTATCAGCGTTCCGCCGACATGGGGCTT 20110 Query 35675 GGCGTGCCCTTCAATATTGCATCATACTCTCTTCTGACTC-ATCTGATG-GCCAGTATGG 35732 || || ||||| |||||||| ||| | || || || | | | || | |||| Sbjct 20111 GGAGTTCCCTTTAATATTGCCAGCTACGCGCTGCTTACGCGCTTAGTTGCTCAAGTA-AC 20169 Query 35733 TGGGTCTAAAACCGGGAGAGTTTATCCTCACTCTTGGTGACGCACA 35778 |||| || ||||| || |||||||| | | | ||||||||||| Sbjct 20170 TGGG-CTGAAACCTGGCGAGTTTATTCATGTTATCGGTGACGCACA 20214 >seq15263 Length=38747 Score = 95.1 bits (104), Expect = 2e-14 Identities = 332/508 (65%), Gaps = 43/508 (8%) Strand=Plus/Plus Query 93604 CGATTATACATGTTGGACGTTAAAGGCTCAAAGGATTCAGAGTTGCCCAGGATCTGTGCA 93663 ||||| ||||| |||||||| | || |||| |||||| |||||| || ||||| || Sbjct 34031 CGATTGTACATATTGGACGTATACGGTTCAATCGATTCATTGTTGCCAAGAATCTGCGCC 34090 Query 93664 GTGGATGCAGTAGGCATGGGAGCAACAAACATTGAATTGTGAACACCATACTTCATAA-- 93721 || || || || |||||||| || || | || || ||| ||| || ||||| || | Sbjct 34091 GTCGAAGCTGTTGGCATGGGCGCCACGAGCAACGAGTTGCGAATCCCGTACTTGATCACC 34150 Query 93722 TGTCCCTTCTCAATTGCTCCCAATCGTGAATTGGCAAAGAGTTGAAATATATGTCCCTAT 93781 ||| ||||| ||| | |||||| || | ||| |||| | Sbjct 34151 TGTTCCTTC--AATGTGTTCCAATCC--------CACAAGCCTGAGGACGGTGTCACG-- 34198 Query 93782 TCTTAATATTTTCCTTCCCCATGTCAAATTGGAAAATCCCTTTGCTCAAAGGACTACCCT 93841 || || || ||||| ||||| |||||||| ||| ||| || Sbjct 34199 ------------CC--CCACAAATCAAACTGGAAGATCCCTTTACTCGCAGGGGAGCCTG 34244 Query 93842 CAAACAGCTCATATGTTTCTCCCTTTTCTTTGGCAATTTCACAT-GAAGCTTCCAAGGCA 93900 ||||| ||| || | | ||| |||||||||||| || ||| || | |||| |||| Sbjct 34245 CAAACGTCTCGTACGGT---CCCAGTTCTTTGGCAATCTC-CATCGACGTCTCCATGGCA 34300 Query 93901 CCATAGTATATAGTTTCAAAAATCCTCTTGTT-AATTAGTGCCGCTTCTTCAGATTCGAA 93959 || | || || |||||||| ||| ||||||| |||| | |||||| || || || Sbjct 34301 GCAAAATAGATGGTTTCAAAGATCTTCTTGTTCAATTCCCG-CGCTTCGTCGCTCTCAAA 34359 Query 93960 GGG--GATTC-TGAGTTTGAAGAACAAATCTGCTAGTCCCTGCACACCCAATCCC-ATTG 94015 || |||| |||| || ||| ||| || || ||||| || ||| ||||| || | Sbjct 34360 TGGATAATTCATGAG---GATAAACGCATCGGCAAGGCCCTGGAC-CCCGATCCCAATCG 34415 Query 94016 GCCTAGTTTTCATATTGGAAATGCGGGTCTTGTCAACTGCATAGAAATTGACATCAATCA 94075 | | | ||||||||| | || | | | || | || ||||||||||||||| Sbjct 34416 GACGATGCCGCATATTGGACGTACGTGCTTCCTTTACGGGGTAATAATTGACATCAATCA 34475 Query 94076 CCTTGTCGAGATTTCTGGTCATGAtttt 94103 |||||| || |||| |||| || ||| Sbjct 34476 CCTTGTTTAGGTTTCGCGTCACGACTTT 34503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989244379100630