Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerospora_20graminicola_20[genbank_20GCA_5F001887855.2_202017-04- 05] 26,786 sequences; 299,901,251 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq15263 179 5e-40 >seq15263 Length=38747 Score = 179 bits (198), Expect = 5e-40 Identities = 908/1429 (64%), Gaps = 25/1429 (2%) Strand=Plus/Plus Query 62394 AATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCA 62453 || || || | ||| || | |||| |||| ||||| ||||||||||| | ||| ||| Sbjct 34010 AACTCGCCGGCCAAGACGCGCCGATTGTACATATTGGACGTATACGGTTCAATCGATTCA 34069 Query 62454 TTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTT 62513 || || || | ||| || || || || || || ||||| || ||||| | || || Sbjct 34070 TTGTTGCCAAGAATCTGCGCCGTCGAAGCTGTTGGCATGGGCGCCACGAGCAACGAGTTG 34129 Query 62514 CTAAGACCGTATGTTCTGATTTTATCTTTTAGATGT-TCCCAATTCCAAAGATCC----G 62568 | || ||||| | | | | || || | |||| | ||||| ||| | | || | Sbjct 34130 CGAATCCCGTACTTGATCACCTGTTCCTTCA-ATGTGTTCCAATCCCACA-AGCCTGAGG 34187 Query 62569 ACGGTACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGCGTACGATCCTACAT 62628 ||||| || | | || | || || ||||| || || ||| || Sbjct 34188 ACGGTGTCACGCCCCACAAATCAAACTGGAAGATCCCTTTACTCGCAGGGGAGCCTGCAA 34247 Query 62629 ATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACT-CGCCTCTAATGCACCGTAA 62687 | || || || ||||| |||| | | | | || | || ||| | ||| | || Sbjct 34248 ACGTCTCGTACGGTCCCAG-TTCTTTGGCAATCTCCATCGACGTCTCCATGGCAGCAAAA 34306 Query 62688 TAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAA 62747 || |||||||||||||||||||| || | || | ||||| ||| |||||||||||| Sbjct 34307 TAGATGGTTTCAAAGATCTTCTTGTTCAATTCCCGCGCTTCGTCGCTCTCAAATGGATAA 34366 Query 62748 TTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 62807 || | ||| |||||||| || || | || || || || || || || || | ||| | | Sbjct 34367 TTCATGAGGATAAACGCATCGGCAAGGCCCTGGACCCCGATCCCAATCGGACGATGCCGC 34426 Query 62808 TTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGA 62867 |||| || | ||||| | || |||||||| | ||| || | || || || Sbjct 34427 ATATTGGACGTACGTGCTTCCTTTACGGGGTAATAATTGACATCAATCACCTTGTTTAGG 34486 Query 62868 TTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCA-TCTAT 62926 |||| | |||||| ||| || | || ||| |||||| || ||| | || Sbjct 34487 TTTCGCGTCACGACTTTGGTCACGTCGTACAATTTTTGAAAATTGAA-CGCACGGTCGTC 34545 Query 62927 TACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGC 62986 ||||| | || || || ||||| || ||||||||||| || |||| | || Sbjct 34546 CACAAATTTCGGTAACGCCACCGATGCGAGGTTACACACGGCCACTTCATCGGGCGACGT 34605 Query 62987 ATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATT 63046 || | || | ||| ||| | ||||| | || || || | ||| |||||||| Sbjct 34606 GTACTCAATCACTTCACAGCACAAGTTACTCGATCGAATCGTGCCGAGATTCTGTTGATT 34665 Query 63047 ACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGA 63106 ||| || ||| ||||| || || ||||| || || || |||||||| | Sbjct 34666 CGACTTGCGATTCGCCGCGTCCTTGTACAGCATGAACGGCACGCCCGTCTCAATCTGGGC 34725 Query 63107 TTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCT 63166 || | || || ||| | | | || || || | || | | | || Sbjct 34726 GTCCAAGATGGCAAACCACAATTGTTGGGCTTTCATGGTC--TTCCGCGCGCGTCCATCG 34783 Query 63167 T--TCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATT-GTCCAATCTAGG 63223 | ||||| | | ||||| ||| |||||| | ||||| |||| || ||| | || Sbjct 34784 TGTTCGTACTGTGCGTACAAGTTTTCAAACTCGGCGCCCCAG-CATTCGTACAAACCGGG 34842 Query 63224 ACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAG 63283 ||| | |||||| | || ||||||||| | | | || || |||||||| | Sbjct 34843 CGCTTCGTTCGGACAGAATAAACTCCACTCTCCATTGGCTTCTACGCGCTTCATAAACAA 34902 Query 63284 ATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCC-TGTAT 63342 |||||||||||| | || ||| | ||| | || | |||| |||||| || || | Sbjct 34903 ATCAGGAATCCACAAGGCATAAAACAAATCACGTGCCCGATGTAACTCGTTGCCGTGGTT 34962 Query 63343 TCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCA 63402 | | |||| || | ||| | | | || | ||||||||| |||||||| ||||| | Sbjct 34963 TTTCCGTAAG-TCCAAAAACTCGAGCACGTCGGCATGCCACGGCTCCAAGTAGATGGCAA 35021 Query 63403 TAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTC 63462 || ||||| || || ||||| | || | || || | |||| | || | Sbjct 35022 ACGAGCCTTTGCGTTTCCCGCCGCCTTGATCCACATACCGTGCCGTATCATTAAAGACGC 35081 Query 63463 TCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGG 63522 |||||| ||||| || || || || || ||||| || || || | | | Sbjct 35082 GCAACATGGGAATGATCCCATTCGAGGAGCCGTTGGTGCCCCGAATGTAACTGTTGGTTG 35141 Query 63523 CACGAATATTA--CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCA 63580 | ||||| ||| | | |||| ||||| || || ||| ||||||||| | || || Sbjct 35142 CTCGAATGTTATGCATACTGAT--CCCTATCCCTCCGGCCCATTTAGAGATACAGGCACA 35199 Query 63581 TCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCA-TGTTAAGTAGAAAAC 63639 | |||| | ||| || || || ||||| || |||||| || || ||| |||||||| Sbjct 35200 TTGTTTAAGCGTATCGTAAATCCCTTCAATCGAATCATCTTGCATTGCTAA-TAGAAAAC 35258 Query 63640 AGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAA 63699 | |||| |||| | || | || ||||| |||||||| || || | ||||| |||| Sbjct 35259 ACGAGGACAATTGGGGCCGGGGTGTCCCCGCGTTAAATAACGTTGGCGTCGCGTGGGTAA 35318 Query 63700 ACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAA 63759 | | |||| || | || | ||||||||| | || | | | || | | | |||| Sbjct 35319 AAAACTTTTGCGACATGAGCTCGTACGTCTCTAACGCCGCGGCAATGTTGCTCTTGTGAA 35378 Query 63760 TTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTT 63808 | |||| || || ||||| | ||| || || || | ||| || | ||| Sbjct 35379 TCCCTAACGCCACGCGCATAATCATTTGTTGCGGCCGTTCGACGACTTT 35427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629606721322080