Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerospora_20graminicola_20[genbank_20GCA_5F001887855.2_202017-04- 05] 26,786 sequences; 299,901,251 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq5719 123 2e-23 >seq5719 Length=28269 Score = 123 bits (136), Expect = 2e-23 Identities = 204/292 (70%), Gaps = 2/292 (1%) Strand=Plus/Minus Query 20888 CGGAAACGGACGCGGGGTCCTCCGCAGCTGAAGCAGCAGGGGATCAACGTGGTTGTTGTA 20947 ||| ||||||||||| | | |||||| | || || || |||||||| || Sbjct 20278 CGGGAACGGACGCGGTGCTCGTGTCAGCTGCTTTTGAAGTGGCTCCACGTGGTTTAGATA 20219 Query 20948 AACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGC 21007 || || |||||||| | || | ||| || || || |||| || || || ||||| Sbjct 20218 CACATGTGCGTCACCGATAACATGAATAAACTCGCCAGGTTTCAGCCCAGTTACTTGAGC 20159 Query 21008 GATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCATGTC 21067 | | ||| || || ||||||||||| || ||||| || || || || |||||||| Sbjct 20158 AACTAAGCGCGTAAGCAGCGCGTAGCTGGCAATATTAAAGGGAACTCCAAGCCCCATGTC 20099 Query 21068 GGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAACTGACACAA 21127 |||||| | ||| |||| || || |||| ||| || |||||||| || || || || Sbjct 20098 GGCGGAACGCTGATACATTTGACATGACAACTCACCGTCCGCCACGTAGAATTGGCAAAA 20039 Query 21128 AACGTGACAAGGAGGGAGAGCCA-TCCGCGCGAGGTCCGCGGGGTTCCACGC 21178 | ||||||||| || | |||| | || | ||| ||||| |||||||| || Sbjct 20038 CATGTGACAAGGTGGCAACGCCATTTCGTG-GAGATCCGCTGGGTTCCAAGC 19988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427636350653280