Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerospora_20graminicola_20[genbank_20GCA_5F001887855.2_202017-04- 05] 26,786 sequences; 299,901,251 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq15263 223 5e-53 >seq15263 Length=38747 Score = 223 bits (246), Expect = 5e-53 Identities = 918/1426 (64%), Gaps = 25/1426 (2%) Strand=Plus/Plus Query 79065 AAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTC 79124 ||| || || | ||| || | |||| |||| ||||| ||||| ||||| | |||||| Sbjct 34009 AAACTCGCCGGCCAAGACGCGCCGATTGTACATATTGGACGTATACGGTTCAATCGATTC 34068 Query 79125 ATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATT 79184 ||| || || | ||| || || || || || |||||||| || ||||| | || || Sbjct 34069 ATTGTTGCCAAGAATCTGCGCCGTCGAAGCTGTTGGCATGGGCGCCACGAGCAACGAGTT 34128 Query 79185 TCTAAGACCGTA--TGATCTGATTTTATCTTTTAGAGATTCCCAATCCCA-AAGA-TCAG 79240 | || ||||| ||||| | || | || | | | ||||||||| ||| | || Sbjct 34129 GCGAATCCCGTACTTGATCACCTGTT--CCTTCAATGTGTTCCAATCCCACAAGCCTGAG 34186 Query 79241 -ACGGGACAACATTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATCCTGTG 79299 |||| || ||| | |||| | || | || || ||||| || || |||| Sbjct 34187 GACGGTGTCACGCCCCACAAATCAAACTGGAAGATCCCTTTACTCGCAGGGGAGCCTGCA 34246 Query 79300 TATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACT-CGCCTCTAATGCTCCGTA 79358 | || || || ||||| | || ||| | || || | || ||| | || | | Sbjct 34247 AACGTCTCGTACGGTCCCAGTTCTTTGGCAATCTC-CATCGACGTCTCCATGGCAGCAAA 34305 Query 79359 ATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATA 79418 ||| |||||||| || |||||||| || | || | ||||| ||| ||||||||||| Sbjct 34306 ATAGATGGTTTCAAAGATCTTCTTGTTCAATTCCCGCGCTTCGTCGCTCTCAAATGGATA 34365 Query 79419 ATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCT 79478 ||| | ||| |||||||| || || | || || || || || || || || | ||| | Sbjct 34366 ATTCATGAGGATAAACGCATCGGCAAGGCCCTGGACCCCGATCCCAATCGGACGATGCCG 34425 Query 79479 CTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAG 79538 | |||| || | ||||| | || |||||||| | ||| || | || || || Sbjct 34426 CATATTGGACGTACGTGCTTCCTTTACGGGGTAATAATTGACATCAATCACCTTGTTTAG 34485 Query 79539 ATTCCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCGTCCATCTAT 79598 || | | |||||| ||| || | | ||| |||||| || | || Sbjct 34486 GTTTCGCGTCACGACTTTGGTCACGTCGTACAATTTTTGAAAATTGAACGCACGGTCGTC 34545 Query 79599 TACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGC 79658 ||||| | ||||| || ||||| || ||||| ||||| || |||| | || Sbjct 34546 CACAAATTTCGGTAACGCCACCGATGCGAGGTTACACACGGCCACTTCATCGGGCGACGT 34605 Query 79659 ATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATT 79718 || | || | |||| ||| | |||||| | ||| || || | ||| |||||||| Sbjct 34606 GTACTCAATCACTTCACAGCACAAGTTACTCGATCGAATCGTGCCGAGATTCTGTTGATT 34665 Query 79719 ACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGA 79778 ||| || ||| ||||| || || |||||||| || || |||||||| | Sbjct 34666 CGACTTGCGATTCGCCGCGTCCTTGTACAGCATGAACGGCACGCCCGTCTCAATCTGGGC 34725 Query 79779 TTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGACTTGTAT-CTCTTTTCTC 79837 || | || || ||| | | | || || || | ||| | | | || Sbjct 34726 GTCCAAGATGGCAAACCACAATTGTTGGGCTTTCATGGT---CTTCCGCGCGCGTCCATC 34782 Query 79838 TT--TCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGG 79895 | ||||| |||| || || ||| |||||| | ||||| |||| || || || Sbjct 34783 GTGTTCGTACTGTGCGTACAAGTTTTCAAACTCGGCGCCCCAGCATTCGTACAAACCGGG 34842 Query 79896 ACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAG 79955 ||||| ||||| | || ||||||||||| | | ||| || |||||||| | Sbjct 34843 CGCTTCGTTCGGACAGAATAAACTCCACTCTCCATTGGCTTCTACGCGCTTCATAAACAA 34902 Query 79956 ATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCC-TGTAT 80014 |||||||||||| | || ||| | ||| | | | ||| |||||| || || | Sbjct 34903 ATCAGGAATCCACAAGGCATAAAACAAATCACGTGCCCGATGTAACTCGTTGCCGTGGTT 34962 Query 80015 TCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCA 80074 | | |||| || | ||| | | | || | ||||||||| |||||||| ||||| | Sbjct 34963 TTTCCGTAAG-TCCAAAAACTCGAGCACGTCGGCATGCCACGGCTCCAAGTAGATGGCAA 35021 Query 80075 TAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTC 80134 || ||||| || || ||||| | || | || || | |||| | || | Sbjct 35022 ACGAGCCTTTGCGTTTCCCGCCGCCTTGATCCACATACCGTGCCGTATCATTAAAGACGC 35081 Query 80135 TCAACATTGGAATAATACCATTGGATGTACCATTGGT-CCCGGAGATATAGCTTCCACTG 80193 |||||| ||||| || ||||| || | || ||||| ||| || || || || | Sbjct 35082 GCAACATGGGAATGATCCCATTCGAGGAGCCGTTGGTGCCCCGA-ATGTAACTGTTGGTT 35140 Query 80194 GCACGAATATTA--CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGC 80251 || ||||| ||| | | |||| ||||| || || ||| ||||||||| | || | Sbjct 35141 GCTCGAATGTTATGCATACTGAT--CCCTATCCCTCCGGCCCATTTAGAGATACAGGCAC 35198 Query 80252 ATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCA-TGTTAAGTAGAAAA 80310 || |||| | |||||| || || || || || |||||| || || ||| ||||||| Sbjct 35199 ATTGTTTAAGCGTATCGTAAATCCCTTCAATCGAATCATCTTGCATTGCTAA-TAGAAAA 35257 Query 80311 CAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 80370 || |||| |||| | || || ||||| |||||||| || || | ||||| ||| Sbjct 35258 CACGAGGACAATTGGGGCCGGGGTGTCCCCGCGTTAAATAACGTTGGCGTCGCGTGGGTA 35317 Query 80371 AACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGA 80430 || | |||| |||| || | ||||||||| | || | | || | | | ||| Sbjct 35318 AAAAACTTTTGCGACATGAGCTCGTACGTCTCTAACGCCGCGGCAATGTTGCTCTTGTGA 35377 Query 80431 ATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGA 80476 || |||| ||| || ||||| | ||| || || || | ||| |||| Sbjct 35378 ATCCCTAACGCCACGCGCATAATCATTTGTTGCGGCCGTTCGACGA 35423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718028305649040