Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerospora_20graminicola_20[genbank_20GCA_5F001887855.2_202017-04- 05] 26,786 sequences; 299,901,251 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq15263 194 2e-44 >seq15263 Length=38747 Score = 194 bits (214), Expect = 2e-44 Identities = 781/1212 (64%), Gaps = 16/1212 (1%) Strand=Plus/Plus Query 71356 ATGCCGTTACTAGCGTATGATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGT 71415 || || ||||| || || |||||| | || ||||| ||||| || || ||| | Sbjct 34220 ATCCCTTTACTCGCAGGGGAGCCTGCAAACGTCTCGTACGGTCCCAGTTCTTTGGCAATC 34279 Query 71416 TCACAACT-CGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATC 71474 || || | || ||| | || || |||| |||||||| || |||||||| || | || Sbjct 34280 TC-CATCGACGTCTCCATGGCAGCAAAATAGATGGTTTCAAAGATCTTCTTGTTCAATTC 34338 Query 71475 TTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTG 71534 | ||||| ||| |||||||||||||| | ||| |||||||| || || | || || Sbjct 34339 CCGCGCTTCGTCGCTCTCAAATGGATAATTCATGAGGATAAACGCATCGGCAAGGCCCTG 34398 Query 71535 AACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATA 71594 || || || || || || | || | | |||| || | ||||| | || || Sbjct 34399 GACCCCGATCCCAATCGGACGATGCCGCATATTGGACGTACGTGCTTCCTTTACGGGGTA 34458 Query 71595 ATAATTAATATCTATAATTTTATTGAGATTTCTGACTATTACTTTGACCACATCCTTTAG 71654 |||||| | ||| || | || || || |||| | |||||| ||| || | | Sbjct 34459 ATAATTGACATCAATCACCTTGTTTAGGTTTCGCGTCACGACTTTGGTCACGTCGTACAA 34518 Query 71655 TTTGAGAAAATCAAATCTCCCATCTATTACAAACA-CGTTCAAGGCAACAGATGCCAGAT 71713 ||| |||||| || | || ||||| || | || || || ||||| || | Sbjct 34519 TTTTTGAAAATTGAACGCACGGTCGTCCACAAATTTCGGT-AACGCCACCGATGCGAGGT 34577 Query 71714 TACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTAC 71773 |||| ||||| || |||| | | || | || | |||| ||| | ||||| Sbjct 34578 TACACACGGCCACTTCATCGGGCGACGTGTACTCAATCACTTCACAGCACAAGTTACTCG 34637 Query 71774 ACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAA 71833 | || || || | ||| |||||||| ||| || ||| ||||| || || | Sbjct 34638 ATCGAATCGTGCCGAGATTCTGTTGATTCGACTTGCGATTCGCCGCGTCCTTGTACAGCA 34697 Query 71834 TAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCT 71893 | ||||| || || |||||||| | || | || || ||| | | | || | Sbjct 34698 TGAACGGCACGCCCGTCTCAATCTGGGCGTCCAAGATGGCAAACCACAATTGTTGGGCTT 34757 Query 71894 TTATTATATTCTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGT 71953 | || | ||| | || |||||| |||| || || ||| |||||| Sbjct 34758 TCATGGTCTTCCGCGCGCGTCCATCGTGTTCGTACTGTGCGTACAAGTTTTCAAACTCGG 34817 Query 71954 CTCCCCAAGCATT-GTCTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCA 72012 | ||||| ||||| || || || || ||| |||||||| | || |||||||||| Sbjct 34818 CGCCCCA-GCATTCGTACAAACCGGGCGCTTCGTTCGGACAGAATAAACTCCACTCTCCA 34876 Query 72013 TCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTG 72072 | | | ||| || |||||||| | |||||||||||| | || ||| | ||| | Sbjct 34877 TTGGCTTCTACGCGCTTCATAAACAAATCAGGAATCCACAAGGCATAAAACAAATCACGT 34936 Query 72073 GTTCTATGCTCCTCGTTTCC-TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGA 72131 | | ||| |||||| || || || | |||| || | ||| | | | || | Sbjct 34937 GCCCGATGTAACTCGTTGCCGTGGTTTTTCCGTAAG-TCCAAAAACTCGAGCACGTCGGC 34995 Query 72132 ATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTAT 72191 ||||||||| |||||||| ||||| | || ||||| || || ||||| | Sbjct 34996 ATGCCACGGCTCCAAGTAGATGGCAAACGAGCCTTTGCGTTTCCCGCCGCCTTGATCCAC 35055 Query 72192 GTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATT 72251 || | || || | |||| | || | |||||| ||||| || ||||| || | || || Sbjct 35056 ATACCGTGCCGTATCATTAAAGACGCGCAACATGGGAATGATCCCATTCGAGGAGCCGTT 35115 Query 72252 GGT-CCCGGAGATATAGCTTCCACTGGCACGAATAT--TGCTAATTGATAGACCTATTCC 72308 ||| ||| || || || || | || ||||| | ||| | |||| ||||| || Sbjct 35116 GGTGCCCCGA-ATGTAACTGTTGGTTGCTCGAATGTTATGCATACTGAT--CCCTATCCC 35172 Query 72309 CCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACT 72368 || ||| ||||||||| | || ||| |||| | |||||| || || || || || Sbjct 35173 TCCGGCCCATTTAGAGATACAGGCACATTGTTTAAGCGTATCGTAAATCCCTTCAATCGA 35232 Query 72369 ATCATCCATCA-TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCAT 72427 |||||| || || ||| ||||||||| |||| |||| | || || ||||| | Sbjct 35233 ATCATCTTGCATTGCTAA-TAGAAAACACGAGGACAATTGGGGCCGGGGTGTCCCCGCGT 35291 Query 72428 TAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAA 72487 ||||||| || || | ||||| ||||| | |||| |||| || | ||||||||| | Sbjct 35292 TAAATAACGTTGGCGTCGCGTGGGTAAAAAACTTTTGCGACATGAGCTCGTACGTCTCTA 35351 Query 72488 TAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAG 72547 || | | || | | | || || |||| ||| || ||||| | ||| || || | Sbjct 35352 ACGCCGCGGCAATGTTGCTCTTGTGAATCCCTAACGCCACGCGCATAATCATTTGTTGCG 35411 Query 72548 GTCTTTCAACGA 72559 | | ||| |||| Sbjct 35412 GCCGTTCGACGA 35423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670914485817360