Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerospora_20graminicola_20[genbank_20GCA_5F001887855.2_202017-04- 05] 26,786 sequences; 299,901,251 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq24131 167 3e-36 seq5719 120 4e-22 seq15263 107 3e-18 >seq24131 Length=32940 Score = 167 bits (184), Expect = 3e-36 Identities = 576/875 (66%), Gaps = 40/875 (5%) Strand=Plus/Plus Query 124995 CTGTTTCCCAT-CAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTT 125053 || |||||||| |||| | || || | ||| | |||||||| || ||| |||| || || Sbjct 30422 CTCTTTCCCATTCAGG-AGCACGAAGTGTGGCAGATGTACAAGAAAGCTGAGGCTTCGTT 30480 Query 125054 TTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGAC 125113 ||||||| ||| ||| | ||| || | ||||| | || |||| || || | || Sbjct 30481 CTGGACGGCCGAGGAGTTGGATTTGGTACATGACCTTAAGGACTGGGTGAATCTT---AC 30537 Query 125114 TGAAACTGAGCGAGAGTTTATATCGCACATTT--TGGCCTTCTTTGCCGGCTCCGATGGA 125171 || | |||||| | ||||| | |||| | | ||||||||||| | |||||| Sbjct 30538 GGACAATGAGCGTCACTTTAT--CAAACATGTACTTGCCTTCTTTGCAGCGAGCGATGGC 30595 Query 125172 ATCGTCAACGACAATCTGTTGACACGATTCTCT-CAAG--AGTTGACCATTCCAGAGGTG 125228 || || || || || ||| | || || || ||| |||| | || || || | Sbjct 30596 ATTGTGAATGAGAACCTG--GCCATGAACTTCAGCAACGAAGTTCAA-ATACCTGAAGC- 30651 Query 125229 TCGT-GCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTAC 125287 |||| |||||||||| ||||| || ||||||||| | ||||| ||| | ||||| Sbjct 30652 TCGTTGCTTTTACGGCTTCCAGATTGCGATTGAGAATATTCACTCCGAAGTTTACTCGCT 30711 Query 125288 ACTGATTGACATGTACATTCGCGATCCGCAACGTA--AACACATGCTCTTTAACGCAATC 125345 || ||||| | ||| ||| ||| | | | | || || ||||| || ||| Sbjct 30712 GCTCATTGATACGTATATTAAGGAT--GTTATGGAGAAAAACCACCTCTTACGTGCCATC 30769 Query 125346 GACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGG---TGATTCGGTG-GATCGATGA 125401 || || | | | | | || || || | |||| ||| |||| |||| | Sbjct 30770 GAAACCATTTCATGTGTCAAAAAGAAAGCCAACTGGGCACTGAAATGGTGTGATCCGCGT 30829 Query 125402 CGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTT 125461 | || |||||||| || | ||| | ||||| ||| | || || ||||| || || Sbjct 30830 GTA----TCGTCGTACGCGGAGCGCCTGTTAGCATTTGCCTCAGTTGAAGGCATTTTTTT 30885 Query 125462 TTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGAC 125521 || ||| |||| |||||||||||||||| |||||||| |||||||| ||||||| Sbjct 30886 CTCAGGTTCTTTTTGTTCCATCTTTTGGCTCAAAAAGCGCGGGCTCATGCCTGGACTGAG 30945 Query 125522 GCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACT 125581 | || ||||| || ||| ||||| || | ||| |||||||| ||| | Sbjct 30946 TTTCTCGAATGAGTTAATCAGTCGTGACGAAGGTATGCACACAGACTTTGCATGTCTCAT 31005 Query 125582 GTT-TCGCAACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTG 125640 || ||| |||| ||| | || | |||| || | | || | | ||| Sbjct 31006 GTACTCGAAACTG-----GTCAACAA-GCTG--CCAGAGA-GCCGTGTGCA-CGAGATTA 31055 Query 125641 TAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGA 125700 | || || |||| ||| || || || ||| | || ||||| || || ||| Sbjct 31056 TTCGTGAGGCTGTGAAGATCGAGCACGAATTTGTGCGTGATTCCCTTCCTGTTGAACTGA 31115 Query 125701 TTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGT 125760 | |||||||||| | ||| |||||| ||||||| |||||||| || || ||| |||| | Sbjct 31116 TCGGCATGAACTCCGCGCTCATGTGCCAGTACATTGAGTTTGTTGCTGACCGTTTACTCT 31175 Query 125761 ACGAGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCA 125820 || || || ||||||||| |||| ||||| || || |||| ||| || | Sbjct 31176 ACTCTCTGGGTGTGTCCAAGATTTATCACGCAAAGAACCCATTCGATTGGATGGACATGA 31235 Query 125821 TATCACTAGAGGGTAAGACCAACTTTTTCGAGAAG 125855 | || || |||| || |||||||||||||| ||| Sbjct 31236 TCTCGCTCCAGGGCAAAACCAACTTTTTCGAAAAG 31270 >seq5719 Length=28269 Score = 120 bits (132), Expect = 4e-22 Identities = 178/250 (71%), Gaps = 2/250 (1%) Strand=Plus/Plus Query 70226 TGGAATCCTGCAGATTTGCACCAAATGGCACTACCACCGTGTCAC-TGTTTGGCTCAGTT 70284 ||||| || || ||| | ||| ||||||| | ||||| |||||| ||||| || || || Sbjct 19991 TGGAACCCAGCGGATCTCCACGAAATGGCGTTGCCACCTTGTCACATGTTTTGC-CAATT 20049 Query 70285 TTACTCGTACGATGGCAAATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCT 70344 ||| | || || | |||||||| |||||||||| | ||||||||||| || Sbjct 20050 CTACGTGGCGGACGGTGAGTTGTCATGTCAAATGTATCAGCGTTCCGCCGACATGGGGCT 20109 Query 70345 CGGTGTACCCTTTAACATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTAC 70404 || || |||||||| ||||| ||||| | || | |||| | | ||||||| | || Sbjct 20110 TGGAGTTCCCTTTAATATTGCCAGCTACGCGCTGCTTACGCGCTTAGTTGCTCAAGTAAC 20169 Query 70405 CGGCCTGAAAGCGCACGAGTTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATCA 70464 || |||||| | |||||| | || || || ||||| || |||||| |||| || Sbjct 20170 TGGGCTGAAACCTGGCGAGTTTATTCATGTTATCGGTGACGCACATGTGTATCTAAACCA 20229 Query 70465 CATCGAGCCA 70474 | | |||||| Sbjct 20230 CGTGGAGCCA 20239 >seq15263 Length=38747 Score = 107 bits (118), Expect = 3e-18 Identities = 256/382 (67%), Gaps = 4/382 (1%) Strand=Plus/Minus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 || |||||| ||||| |||| | | ||| |||||||||| || ||||| || ||| Sbjct 35049 CAAGGCGGCGGGAAACGCAAAGGCTCGTTTGCCATCTACTTGGAGCCGTGGCATGCCGAC 34990 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCA-CGAGCCAGGGA 96994 || | || ||| | || | || |||||| ||| || | || || || | || Sbjct 34989 GTGCTCGAGTTTTTGGACTTACGGAAAAACCACGGCAACGA-GTTACATCGGGCACGTGA 34931 Query 96995 CTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTA 97054 ||||||||||| | ||| | || |||||||| ||||||||||| | | | ||| | Sbjct 34930 TTTGTTTTATGCCTTGTGGATTCCTGATTTGTTTATGAAGCGCGTAGAAGCCAATGGAGA 34871 Query 97055 CTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTT 97114 ||||| || | || || || | |||||| ||| ||| |||||||||| ||||| Sbjct 34870 GTGGAGTTTATTCTGTCCGAACGAAGCGCCCGGTTTGTACGAATGCTGGGGCGCCGAGTT 34811 Query 97115 TGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCG-ATACGTGAGACGAGTCGATGCAC 97173 ||| | |||| | ||||| || || || || || |||| | | | || | Sbjct 34810 TGAAAACTTGTACGCACAGTACGAACACGATGGACGCGCGCGGAAGACCA-TGAAAGCCC 34752 Query 97174 GAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCT 97233 | || ||||| |||||| || || ||| | ||||| || |||| ||| || | Sbjct 34751 AACAATTGTGGTTTGCCATCTTGGACGCCCAGATTGAGACGGGCGTGCCGTTCATGCTGT 34692 Query 97234 ACAAGGATACCGTGAATCGCAA 97255 ||||||| | | ||||||||| Sbjct 34691 ACAAGGACGCGGCGAATCGCAA 34670 Score = 87.8 bits (96), Expect = 3e-12 Identities = 128/179 (72%), Gaps = 4/179 (2%) Strand=Plus/Minus Query 98040 TACAAGACTGTCTGGGAGATTCCGACCAAGACGC--TGATCGATATGGCTGCCGACAGAG 98097 |||||||| || ||||| ||| | ||| | || || ||||| | || ||||| | | Sbjct 33873 TACAAGACAGTGTGGGAAATTA--AACAAAAGGCCGTGCTCGATCTTGCGGCCGATCGTG 33816 Query 98098 GTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGTC 98157 | | |||||| |||||||| ||| | || | | ||||||| || || ||| Sbjct 33815 GCGCGTACATTTGTCAGAGTCAGTCGCTAAACATTCATATTGCCGACCCGACGATTAGTA 33756 Query 98158 GTATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTAT 98216 | || || || ||||||||||||||||| ||||| || || ||||||||||||||| Sbjct 33755 AACTCACGTCCATGCACTTTTACGCATGGAAAAAGGGACTGAAAACGGGCATGTACTAT 33697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740811074853360