Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerospora_20graminicola_20[genbank_20GCA_5F001887855.2_202017-04- 05] 26,786 sequences; 299,901,251 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq13324 91.5 1e-13 >seq13324 Length=6237 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTC 43971 ||||||||| ||||| ||| || || || || ||||| | |||| | || || Sbjct 6112 CACCAAATGCAGCGTCGACTCCTTCTGGATGTTGTAATCAGCAAGCGTACGCCCGTCCTC 6053 Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031 | ||| || || ||||| || | || |||||||| | || | |||||| || ||| Sbjct 6052 TAGTTGCTTGCCAGCAAAGATTAGACGCTGCTGGTCTGGCGGAATACCTTCCTTGTCTTG 5993 Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091 ||| ||| || || | ||| || || | |||||||||||||| ||| ||||| || Sbjct 5992 AATCTTTGCCTTCACGTTGTCAATCGTGTCGGACGGCTCCACATCGAGCGTGATTGTCTT 5933 Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || | || |||||||| || ||||| Sbjct 5932 GCCCGTCAGTGTTTTCACAAAAATCTGCAT 5903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354661781300328