Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerospora_20graminicola_20[genbank_20GCA_5F001887855.2_202017-04- 05] 26,786 sequences; 299,901,251 total letters Query= NC_005260.1 Length=233234 Score E Sequences producing significant alignments: (Bits) Value seq26419 86.0 9e-12 seq22754 86.0 9e-12 seq17108 86.0 9e-12 seq17107 86.0 9e-12 seq16703 86.0 9e-12 seq653 86.0 9e-12 seq377 86.0 9e-12 seq2418 84.2 3e-11 seq947 84.2 3e-11 seq932 84.2 3e-11 >seq26419 Length=1667 Score = 86.0 bits (94), Expect = 9e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 108015 GCCCCCACTCGGGATTGAACCGAGGACCTACTGCTTACAAGGCAGTTGCTCTACCACTGA 108074 ||| || | ||||||||||||| |||||| ||||||||||| ||| |||||||||||||| Sbjct 355 GCCTCCGCCCGGGATTGAACCGGGGACCTTCTGCTTACAAGACAGATGCTCTACCACTGA 414 Query 108075 GCTATAGAGGCG 108086 || | | ||||| Sbjct 415 GCCACACAGGCG 426 >seq22754 Length=9781 Score = 86.0 bits (94), Expect = 9e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 108015 GCCCCCACTCGGGATTGAACCGAGGACCTACTGCTTACAAGGCAGTTGCTCTACCACTGA 108074 ||| || | ||||||||||||| |||||| ||| ||||||| ||| |||||||||||||| Sbjct 9221 GCCTCCGCCCGGGATTGAACCGGGGACCTTCTGTTTACAAGACAGATGCTCTACCACTGA 9162 Query 108075 GCTATAGAGGCG 108086 || ||| ||||| Sbjct 9161 GCCATACAGGCG 9150 >seq17108 Length=6518 Score = 86.0 bits (94), Expect = 9e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 108015 GCCCCCACTCGGGATTGAACCGAGGACCTACTGCTTACAAGGCAGTTGCTCTACCACTGA 108074 ||| || | ||||||||||||| |||||| ||| ||||||| ||| |||||||||||||| Sbjct 2410 GCCTCCGCCCGGGATTGAACCGGGGACCTTCTGTTTACAAGACAGATGCTCTACCACTGA 2469 Query 108075 GCTATAGAGGCG 108086 || ||| ||||| Sbjct 2470 GCCATACAGGCG 2481 >seq17107 Length=10109 Score = 86.0 bits (94), Expect = 9e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 108015 GCCCCCACTCGGGATTGAACCGAGGACCTACTGCTTACAAGGCAGTTGCTCTACCACTGA 108074 ||| || | ||||||||||||| |||||| ||| ||||||| ||| |||||||||||||| Sbjct 2414 GCCTCCGCCCGGGATTGAACCGGGGACCTTCTGTTTACAAGACAGATGCTCTACCACTGA 2473 Query 108075 GCTATAGAGGCG 108086 || ||| ||||| Sbjct 2474 GCCATACAGGCG 2485 >seq16703 Length=8045 Score = 86.0 bits (94), Expect = 9e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 108015 GCCCCCACTCGGGATTGAACCGAGGACCTACTGCTTACAAGGCAGTTGCTCTACCACTGA 108074 ||| || | ||||||||||||| |||||| ||| ||||||| ||| |||||||||||||| Sbjct 7484 GCCTCCGCCCGGGATTGAACCGGGGACCTTCTGTTTACAAGACAGATGCTCTACCACTGA 7425 Query 108075 GCTATAGAGGCG 108086 || ||| ||||| Sbjct 7424 GCCATACAGGCG 7413 >seq653 Length=9981 Score = 86.0 bits (94), Expect = 9e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 108015 GCCCCCACTCGGGATTGAACCGAGGACCTACTGCTTACAAGGCAGTTGCTCTACCACTGA 108074 ||| || | ||||||||||||| |||||| ||| ||||||| ||| |||||||||||||| Sbjct 8415 GCCTCCGCCCGGGATTGAACCGGGGACCTTCTGTTTACAAGACAGATGCTCTACCACTGA 8356 Query 108075 GCTATAGAGGCG 108086 || ||| ||||| Sbjct 8355 GCCATACAGGCG 8344 >seq377 Length=2680 Score = 86.0 bits (94), Expect = 9e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 108015 GCCCCCACTCGGGATTGAACCGAGGACCTACTGCTTACAAGGCAGTTGCTCTACCACTGA 108074 ||| || | ||||||||||||| |||||| ||| ||||||| ||| |||||||||||||| Sbjct 366 GCCTCCGCCCGGGATTGAACCGGGGACCTTCTGTTTACAAGACAGATGCTCTACCACTGA 307 Query 108075 GCTATAGAGGCG 108086 || ||| ||||| Sbjct 306 GCCATACAGGCG 295 >seq2418 Length=8910 Score = 84.2 bits (92), Expect = 3e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 108015 GCCCCCACTCGGGATTGAACCGAGGACCTACTGCTTACAAGGCAGTTGCTCTACCACTGA 108074 ||| || | ||||||||||||| |||||| ||| ||||||| ||| |||||||||||||| Sbjct 856 GCCTCCGCCCGGGATTGAACCGGGGACCTTCTGTTTACAAGACAGATGCTCTACCACTGA 915 Query 108075 GCTATAGAGGC 108085 |||| | |||| Sbjct 916 GCTACACAGGC 926 >seq947 Length=12896 Score = 84.2 bits (92), Expect = 3e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 108015 GCCCCCACTCGGGATTGAACCGAGGACCTACTGCTTACAAGGCAGTTGCTCTACCACTGA 108074 ||| || | ||||||||||||| |||||| ||| ||||||| ||| |||||||||||||| Sbjct 12041 GCCTCCGCCCGGGATTGAACCGGGGACCTTCTGTTTACAAGACAGATGCTCTACCACTGA 11982 Query 108075 GCTATAGAGGC 108085 |||| | |||| Sbjct 11981 GCTACACAGGC 11971 >seq932 Length=9286 Score = 84.2 bits (92), Expect = 3e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 108015 GCCCCCACTCGGGATTGAACCGAGGACCTACTGCTTACAAGGCAGTTGCTCTACCACTGA 108074 ||| || | ||||||||||||| |||||| ||| ||||||| ||| |||||||||||||| Sbjct 3044 GCCTCCGCCCGGGATTGAACCGGGGACCTTCTGTTTACAAGACAGATGCTCTACCACTGA 3103 Query 108075 GCTATAGAGGC 108085 |||| | |||| Sbjct 3104 GCTACACAGGC 3114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 745970946620640