Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerospora_20graminicola_20[genbank_20GCA_5F001887855.2_202017-04- 05] 26,786 sequences; 299,901,251 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq13324 131 4e-25 seq18532 100 7e-16 >seq13324 Length=6237 Score = 131 bits (144), Expect = 4e-25 Identities = 152/204 (75%), Gaps = 1/204 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || || |||| || || | ||||| |||||||| || ||| Sbjct 6099 GTCGACTCCTTCTGGATGTTGTAATCAGCAAGCGTACGCCCGTCCTCTAGTTGCTTGCCA 6040 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| ||||| | ||| || || || || || ||||| || || ||||||||||| || Sbjct 6039 GCAAAGATTAGACGCTGCTGGTCTGGCGGAATACCTTCCTTGTCTTGAATCTTTGCCTTC 5980 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | || ||| || || || || || || || ||||| || || |||||| Sbjct 5979 ACGTTGTCAATCGTGTCGGACGGCTCCACATCGAGCGTGATTGTCTTGCCCGTCAGTGTT 5920 Query 104543 TTTACAAATATCTGCATT-TTGTG 104565 || ||||| ||||||||| ||||| Sbjct 5919 TTCACAAAAATCTGCATTGTTGTG 5896 >seq18532 Length=6745 Score = 100 bits (110), Expect = 7e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 104372 TTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATT 104431 || || || || ||||| | || || | || || || || || || |||||||| ||| Sbjct 5154 TTTTGGATGTTGTAGTCGGCCAGTGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATT 5213 Query 104432 AGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCT 104491 || | ||| || ||||| || |||||||| || |||||||| || || || ||||| || Sbjct 5214 AGACGCTGCTGGTCAGGTGGGATTCCTTCCTTGTCCTGAATTTTGGCCTTAACATTGTCA 5273 Query 104492 ACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAAT 104551 | || ||| || || || || | || || ||||| || || | || || |||||| Sbjct 5274 ATCGTGTCGGACGGCTCCACATCCAACGTGATGGTCTTGCCCGTCAAGGTCTTCACAAAT 5333 Query 104552 ATCTGCAT 104559 |||||||| Sbjct 5334 ATCTGCAT 5341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151003245106488