Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerospora_20graminicola_20[genbank_20GCA_5F001887855.2_202017-04- 05] 26,786 sequences; 299,901,251 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq13324 111 1e-19 seq18532 100 3e-16 >seq13324 Length=6237 Score = 111 bits (122), Expect = 1e-19 Identities = 157/217 (72%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| |||||| |||| || || ||||| || | ||| ||||| || || || | Sbjct 6117 CGCAGCACCAAATGCAGCGTCGACTCCTTCTGGATGTTGTAATCAG-CA-AGCGTACGCC 6060 Query 94853 --TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910 ||||| || || || || ||||||||| | ||||| ||||| ||||||||||| | Sbjct 6059 CGTCCTCTAGTTGCTTGCCAGCAAAGATTAGACGCTGCTGGTCTGGCGGAATACCTTCCT 6000 Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGA 94970 |||| | ||| |||||||| ||| | | | ||||| | | || || || | ||||| Sbjct 5999 TGTCTTGAATCTTTGCCTTCACGTTGTCAATCGTGTCGGACGGCTCCACATCGAGCGTGA 5940 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || || || || ||||||||||| |||||||| Sbjct 5939 TTGTCTTGCCCGTCAGTGTTTTCACAAAAATCTGCAT 5903 >seq18532 Length=6745 Score = 100 bits (110), Expect = 3e-16 Identities = 138/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 94818 CCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGA 94877 ||||||| | ||| || ||| || ||| | |||||| ||||| || || |||||| Sbjct 5152 CCTTTTGGATGTTGTAGTCGGCCAGTGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGA 5211 Query 94878 TTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGC 94937 ||| | ||||| || || || || ||||| ||||| | |||||| ||||| || | Sbjct 5212 TTAGACGCTGCTGGTCAGGTGGGATTCCTTCCTTGTCCTGAATTTTGGCCTTAACATTGT 5271 Query 94938 CGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAA 94997 | | ||||| | | || || || | ||||||||| || || || | || ||||||| Sbjct 5272 CAATCGTGTCGGACGGCTCCACATCCAACGTGATGGTCTTGCCCGTCAAGGTCTTCACAA 5331 Query 94998 AGATCTGCATGCT 95010 | ||||||||||| Sbjct 5332 ATATCTGCATGCT 5344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448141100898960