Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerospora_20graminicola_20[genbank_20GCA_5F001887855.2_202017-04- 05] 26,786 sequences; 299,901,251 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq19731 143 4e-30 seq9555 143 4e-30 seq6853 143 4e-30 >seq19731 Length=30444 Score = 143 bits (158), Expect = 4e-30 Identities = 190/261 (73%), Gaps = 2/261 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || |||||||||| |||||| || ||||| || || || || ||||| || ||| Sbjct 24502 GCCAAACGTCATCGCAAGGTTCTTCGTGACAACATTCAGGGGATAACTAAGCCTGCAATC 24561 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||| || |||||||||||||| || |||||| |||| ||| | | ||||| || | Sbjct 24562 CGTCGGCTTGCTCGTCGTGGTGGTGTGAAGCGTATCTCCGGACTTATTTATGAGGAAACC 24621 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGA-TGCTTTCCACTATACCGA 16611 || | ||| |||||| |||||||| ||| || |||| ||| | || || || || || Sbjct 24622 CGCGGTGTCTTGAAGGTCTTCCTCGAGAATGTAATCCGTGACTCGGTTACA-TACACAGA 24680 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || |||||||| | ||||| | || || || | || ||||| || Sbjct 24681 GCACGCCCGCCGAAAAACTGTCACTGCTATGGACGTTGTGTACGCTCTAAAGCGTCAGGG 24740 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 || | | | |||||||| || Sbjct 24741 ACGCACGCTGTATGGTTTCGG 24761 >seq9555 Length=7501 Score = 143 bits (158), Expect = 4e-30 Identities = 190/261 (73%), Gaps = 2/261 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || |||||||||| |||||| || ||||| || || || || ||||| || ||| Sbjct 2965 GCCAAACGTCATCGCAAGGTTCTTCGTGACAACATTCAGGGGATAACTAAGCCTGCAATC 2906 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||| || |||||||||||||| || |||||| |||| ||| | | ||||| || | Sbjct 2905 CGTCGGCTTGCTCGTCGTGGTGGTGTGAAGCGTATCTCCGGACTTATTTATGAGGAAACC 2846 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGA-TGCTTTCCACTATACCGA 16611 || | ||| |||||| |||||||| ||| || |||| ||| | || || || || || Sbjct 2845 CGCGGTGTCTTGAAGGTCTTCCTCGAGAATGTAATCCGTGACTCGGTTACA-TACACAGA 2787 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || |||||||| | ||||| | || || || | || ||||| || Sbjct 2786 GCACGCCCGCCGAAAAACTGTCACTGCTATGGACGTTGTGTACGCTCTAAAGCGTCAGGG 2727 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 || | | | |||||||| || Sbjct 2726 ACGCACGCTGTATGGTTTCGG 2706 >seq6853 Length=5214 Score = 143 bits (158), Expect = 4e-30 Identities = 190/261 (73%), Gaps = 2/261 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || |||||||||| |||||| || ||||| || || || || ||||| || ||| Sbjct 2041 GCCAAACGTCATCGCAAGGTTCTTCGTGACAACATTCAGGGGATAACTAAGCCTGCAATC 2100 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||| || |||||||||||||| || |||||| |||| ||| | | ||||| || | Sbjct 2101 CGTCGGCTTGCTCGTCGTGGTGGTGTGAAGCGTATCTCCGGACTTATTTATGAGGAAACC 2160 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGA-TGCTTTCCACTATACCGA 16611 || | ||| |||||| |||||||| ||| || |||| ||| | || || || || || Sbjct 2161 CGCGGTGTCTTGAAGGTCTTCCTCGAGAATGTAATCCGTGACTCGGTTACA-TACACAGA 2219 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || |||||||| | ||||| | || || || | || ||||| || Sbjct 2220 GCACGCCCGCCGAAAAACTGTCACTGCTATGGACGTTGTGTACGCTCTAAAGCGTCAGGG 2279 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 || | | | |||||||| || Sbjct 2280 ACGCACGCTGTATGGTTTCGG 2300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79050709372698