Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerospora_20graminicola_20[genbank_20GCA_5F001887855.2_202017-04- 05] 26,786 sequences; 299,901,251 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq15263 172 7e-38 >seq15263 Length=38747 Score = 172 bits (190), Expect = 7e-38 Identities = 723/1127 (64%), Gaps = 16/1127 (1%) Strand=Plus/Plus Query 62635 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 62694 |||| |||||||| ||||||||||| || | || | ||||| ||| |||||||||| Sbjct 34305 AATAGATGGTTTCAAAGATCTTCTTGTTCAATTCCCGCGCTTCGTCGCTCTCAAATGGAT 34364 Query 62695 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62754 |||| | ||| |||||||| || || | || || || || || || || || | ||| | Sbjct 34365 AATTCATGAGGATAAACGCATCGGCAAGGCCCTGGACCCCGATCCCAATCGGACGATGCC 34424 Query 62755 TCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGA 62814 | |||| || | ||||| | || |||||||| | ||| || | || || | Sbjct 34425 GCATATTGGACGTACGTGCTTCCTTTACGGGGTAATAATTGACATCAATCACCTTGTTTA 34484 Query 62815 GATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCA-TCT 62873 | |||| | |||||| ||| || | || ||| |||||| || ||| | || Sbjct 34485 GGTTTCGCGTCACGACTTTGGTCACGTCGTACAATTTTTGAAAATTGAA-CGCACGGTCG 34543 Query 62874 ATTACAAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCC 62933 ||||| | || || || ||||| || ||||| ||||| || |||| | | Sbjct 34544 TCCACAAATTTCGGTAACGCCACCGATGCGAGGTTACACACGGCCACTTCATCGGGCGAC 34603 Query 62934 GCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGA 62993 | || | || | ||| ||| | ||||| | || || || | ||| |||||| Sbjct 34604 GTGTACTCAATCACTTCACAGCACAAGTTACTCGATCGAATCGTGCCGAGATTCTGTTGA 34663 Query 62994 TTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGA 63053 || ||| || ||| ||||| || || ||||| || || || |||||||| Sbjct 34664 TTCGACTTGCGATTCGCCGCGTCCTTGTACAGCATGAACGGCACGCCCGTCTCAATCTGG 34723 Query 63054 GATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCT 63113 | || | || || ||| | | | || || || | || | | | | Sbjct 34724 GCGTCCAAGATGGCAAACCACAATTGTTGGGCTTTCATGGTC--TTCCGCGCGCGTCCAT 34781 Query 63114 CTT--TCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATT-GTCCAATCCA 63170 | | ||||| ||| ||||| ||| |||||| | ||||| |||| || ||| || Sbjct 34782 CGTGTTCGTACTGTGCGTACAAGTTTTCAAACTCGGCGCCCCAG-CATTCGTACAAACCG 34840 Query 63171 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAG 63230 || ||| | |||||| | || ||||||||| | | | || || |||||||| Sbjct 34841 GGCGCTTCGTTCGGACAGAATAAACTCCACTCTCCATTGGCTTCTACGCGCTTCATAAAC 34900 Query 63231 AGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCC-TGT 63289 | |||||||||||| | || ||| | ||| | | | |||| |||||| || || Sbjct 34901 AAATCAGGAATCCACAAGGCATAAAACAAATCACGTGCCCGATGTAACTCGTTGCCGTGG 34960 Query 63290 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 63349 || | |||| || | ||| | | | || | ||||||||| |||||||| ||||| Sbjct 34961 TTTTTCCGTAAG-TCCAAAAACTCGAGCACGTCGGCATGCCACGGCTCCAAGTAGATGGC 35019 Query 63350 CATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 63409 | || ||||| || || ||||| | || | || || | |||| | || Sbjct 35020 AAACGAGCCTTTGCGTTTCCCGCCGCCTTGATCCACATACCGTGCCGTATCATTAAAGAC 35079 Query 63410 TCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACT 63469 | |||||| ||||| || || || || || ||||| || || || || | Sbjct 35080 GCGCAACATGGGAATGATCCCATTCGAGGAGCCGTTGGTGCCCCGAATGTAACTGTTGGT 35139 Query 63470 GGCACGAATATTA--CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCG 63527 || ||||| ||| | | |||| ||||| || || ||| ||||||||| | || Sbjct 35140 TGCTCGAATGTTATGCATACTGAT--CCCTATCCCTCCGGCCCATTTAGAGATACAGGCA 35197 Query 63528 CATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCA-TGTTAAGTAGAAA 63586 ||| |||| | ||| || || || || || || |||||| || || ||| |||||| Sbjct 35198 CATTGTTTAAGCGTATCGTAAATCCCTTCAATCGAATCATCTTGCATTGCTAA-TAGAAA 35256 Query 63587 ACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGT 63646 ||| |||| |||| | || || ||||| |||||||| || || | ||||| || Sbjct 35257 ACACGAGGACAATTGGGGCCGGGGTGTCCCCGCGTTAAATAACGTTGGCGTCGCGTGGGT 35316 Query 63647 AAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATG 63706 ||| | |||| || | || | ||||||||| | || | | | || | | | || Sbjct 35317 AAAAAACTTTTGCGACATGAGCTCGTACGTCTCTAACGCCGCGGCAATGTTGCTCTTGTG 35376 Query 63707 AATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGA 63753 ||| |||| || || ||||| | ||| || || || | ||| |||| Sbjct 35377 AATCCCTAACGCCACGCGCATAATCATTTGTTGCGGCCGTTCGACGA 35423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622738621703760