Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerospora_20graminicola_20[genbank_20GCA_5F001887855.2_202017-04- 05] 26,786 sequences; 299,901,251 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq15263 241 3e-58 seq5719 152 1e-31 seq24131 100 7e-16 >seq15263 Length=38747 Score = 241 bits (266), Expect = 3e-58 Identities = 830/1280 (65%), Gaps = 21/1280 (2%) Strand=Plus/Minus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 || || ||||| |||||||| | | || || || || | || || |||| || Sbjct 35319 TTTACCCACGCGACGCCAACGTTATTTAACGCGGGGACACCCCGGCCCCAATTGTCCTCG 35260 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 || ||||| || |||| | || ||||| || || || || | || || ||||| | Sbjct 35259 TGTTTTCTATTAGCAATGCAAGATGATTCGATTGAAGGGATTTACGATACGCTTAAACAA 35200 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA 363726 ||||| ||| || || || || || || || | || || || |||| ||| Sbjct 35199 TGTGCCTGTATCTCTAAATGGGCCGGAGGGATAGGGATCAGTATGCATAACATTCGAGCA 35140 Query 363727 CAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGT 363786 |||||||||||||| ||||| || | |||||||||| | |||||||| | || Sbjct 35139 ACCAACAGTTACATTCGGGGCACCAACGGCTCCTCGAATGGGATCATTCCCATGTTGCGC 35080 Query 363787 GTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTT 363846 || ||| | |||| || |||| || || || || || || || |||||||| ||||| Sbjct 35079 GTCTTTAATGATACGGCACGGTATGTGGATCAAGGCGGCGGGAAACGCAAAGGCTCGTTT 35020 Query 363847 GCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAAC 363906 || || || | ||||| |||||||| | | |||||| | || | ||||||||| Sbjct 35019 GCCATCTACTTGGAGCCGTGGCATGCCGACGTGCTCGAGTTTTTGGACTTACGGAAAAAC 34960 Query 363907 ACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCAT 363966 || || ||| | || ||||||||| |||| ||||| | ||| || |||| Sbjct 34959 CACGGCAACGAGTTACATCGGGCACGTGATTTGTTTTATGCCTTGTGGATTCCTGATTTG 34900 Query 363967 TTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCA 364026 |||||||||||||| || || | | ||| | || || || ||||| || Sbjct 34899 TTTATGAAGCGCGTAGAAGCCAATGGAGAGTGGAGTTTATTCTGTCCGAACGAAGCGCCC 34840 Query 364027 GGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAG 364086 ||| | | ||| ||||| | ||| | || | |||| | |||| ||| || Sbjct 34839 GGTTTGTACGAATGCTGGGGCGCCGAGTTTGAAAACTTGTACGCACAGTACGAACACGAT 34780 Query 364087 GGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAG 364146 ||| || || ||||| || || || | | |||||||||||| |||| | ||| Sbjct 34779 GGACGCGCGCGGAAGACCATGAAAGCCCAACAATTGTGGTTTGCCATCTTGGACGCCCAG 34720 Query 364147 ATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAG 364206 |||||||| || || | ||| ||||||| || || || |||||||| || || Sbjct 34719 ATTGAGACGGGCGTGCCGTTCATGCTGTACAAGGACGCGGCGAATCGCAAGTCGAATCAA 34660 Query 364207 CAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCT 364266 ||| | || || || |||| ||| ||| | || || | ||||| ||||| | Sbjct 34659 CAGAATCTCGGCACGATTCGATCGAGTAACTTGTGCTGTGAAGTGATTGAGTACACGTCG 34600 Query 364267 CCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAAAGAT 364326 ||||| || ||||| |||||||| || ||| | ||| | ||| ||||| | || Sbjct 34599 CCCGATGAAGTGGCCGTGTGTAACCTCGCATCGGTGGCGTTACCGAAATTTGTGGACGAC 34540 Query 364327 GGTACTTTTGACCACCAGCATCTTTATGACGTAACCTA--TCATGCTACTTGCAATCTCG 364384 || | || | || | | || ||||| ||| | || || || | || || Sbjct 34539 CGTGCGTTCAATTTTCAAAAATTGTACGACGTGACCAAAGTCGTG--ACGCGAAACCTAA 34482 Query 364385 ACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGC-CGAGCGTTCTAATATGCGT 364443 ||||||| || || |||||||| || | ||||| || || || |||||||| Sbjct 34481 ACAAGGTGATTGATGTCAATTATTACCCCGTAAAGGAAGCACGTACG-TCCAATATGCGG 34423 Query 364444 CATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGATG 364503 ||||| |||||||| | || || |||||||| || || | ||||| | | || Sbjct 34422 CATCGTCCGATTGGGATCGGGGTCCAGGGCCTTGCCGATGCGTTTATCCTCATGAATTAT 34363 Query 364504 GCATTTGA-TTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTT 364562 ||||||| || | || || || | | || ||| ||||||||||||| || ||||| Sbjct 34362 CCATTTGAGAGCGAC-GAAGCGCGGGAATTGAACAAGAAGATCTTTGAAACCATCTATTT 34304 Query 364563 TGCCGCAATGACTGCTTCG-TGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATG 364621 ||| || ||| | ||| || ||| |||| | | |||| |||| || | || Sbjct 34303 TGCTGCCATGGAGACGTCGATGGAGATTGCCAAAGAAC-TGGGACCGTACGAGACGTTTG 34245 Query 364622 AGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCA---CGCCAT 364678 || |||||| | || | |||||||||||| | ||| || | || | | Sbjct 34244 CAGGCTCCCCTGCGAGTAAAGGGATCTTCCAGTTTGATTTGTGGGGCGTGACACCGTCCT 34185 Query 364679 CTGTCCGATGGAACTGGGATACGCT-ACGTTCCAACGTTAAGAAGCATGGTACTCGCAAC 364737 | | | ||| | ||| | || | | | | | || | ||| | || | ||||||| Sbjct 34184 CAGGCTTGTGGGATTGGAACACATTGAAGGAAC-AGGTGATCAAGTACGGGATTCGCAAC 34126 Query 364738 TC---CCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAAC 364794 || ||||| ||||||||||| || ||||| || || ||||| || || ||||| Sbjct 34125 TCGTTGCTCGT---GGCGCCCATGCCAACAGCTTCGACGGCGCAGATTCTTGGCAACAAT 34069 Query 364795 GAGTGCTTCGAACCGTTTAC 364814 || | | ||||||| ||| Sbjct 34068 GAATCGATTGAACCGTATAC 34049 >seq5719 Length=28269 Score = 152 bits (168), Expect = 1e-31 Identities = 334/493 (68%), Gaps = 12/493 (2%) Strand=Plus/Plus Query 111426 ATTTGGGATGGAAATGGATCACGTGACTTTCTAGATTCAGTTG-GTCTTGT-CGACAACG 111483 ||||||||||| ||||| || ||||| || | || |||| | | ||| | | || Sbjct 19769 ATTTGGGATGGTAATGGCTCGCGTGAGTTCTTGGA--CAGTAGAGGGTTGCACTCCCGCG 19826 Query 111484 AAGAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACA 111543 | | || ||||||||||| || || || ||||||||||| ||||||||||| |||| Sbjct 19827 AGGTTGGAGATCTCGGACCTGTATATGGCTTTCAATGGCGTCACTTTGGTGCCACATACA 19886 Query 111544 AAACCATGCACGACTCATATGATTCA---CAGGGAACTGATCAATTACAGAATGTCATTG 111600 | ||||| | || || || | || || || || | | | || |||| Sbjct 19887 CGAATATGCATG---CAGATTATACTGGTCAAGGCGTGGACCAGCTCGCGGAGGTGATTG 19943 Query 111601 ATCAAATTAAGAACAA-CCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAAT 111659 | ||| | | ||| ||| | | ||||| ||| | | || ||||||||| Sbjct 19944 A-CAAGCTCCGTTCAAACCCCAGTGACCGTCGGATTGTGCTTTCGGCTTGGAACCCAGCG 20002 Query 111660 GCATTGGAAAAAATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTATGTACACGAC 111719 | | | ||||||| | ||||| ||||| | | ||||| || || || ||| Sbjct 20003 GATCTCCACGAAATGGCGTTGCCACCTTGTCACATGTTTTGCCAATTCTACGTGGCGGAC 20062 Query 111720 GGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTT 111779 || | | ||||| |||||||||||||| || || || || || ||||| ||||| ||| Sbjct 20063 GGTGAGTTGTCATGTCAAATGTATCAGCGTTCCGCCGACATGGGGCTTGGAGTTCCCTTT 20122 Query 111780 AATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCATTTTACAAATCTCAAACCG 111839 |||||||| || ||||| || ||||| ||||| | ||||| | || || ||||| Sbjct 20123 AATATTGCCAGCTACGCGCTGCTTACGCGCTTAGTTGCTCAAGTAACTGGGCTGAAACCT 20182 Query 111840 GGTGAATTCATTCACGTTATCGGAGATGCGCATGTTTACACAAACCACATTGATGCACTT 111899 || || || ||||| |||||||| || || ||||| || ||||||| | || ||||| Sbjct 20183 GGCGAGTTTATTCATGTTATCGGTGACGCACATGTGTATCTAAACCACGTGGAGCCACTT 20242 Query 111900 AAAACACAGTTGA 111912 ||| ||| ||| Sbjct 20243 CAAAAGCAGCTGA 20255 >seq24131 Length=32940 Score = 100 bits (110), Expect = 7e-16 Identities = 118/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 22485 CGCGGAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTG 22544 |||||| || || | |||||||| |||||||||||||| || || || | ||||| Sbjct 30841 CGCGGAGCGCCTGTTAGCATTTGCCTCAGTTGAAGGCATTTTTTTCTCAGGTTCTTTTTG 30900 Query 22545 TGCAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTT 22604 | | ||||||||||| ||||| || | | ||||| || || | || || |||||||| Sbjct 30901 TTCCATCTTTTGGCTCAAAAAGCGCGGGCTCATGCCTGGACTGAGTTTCTCGAATGAGTT 30960 Query 22605 AATTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGT 22644 ||| || || || || ||| | || || || ||||| ||| Sbjct 30961 AATCAGTCGTGACGAAGGTATGCACACAGACTTTGCATGT 31000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302906294746652